Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03678 ATGGAGTGGACTAGAGGCAACATCATCGGACATGGCTCATCCGCCACCGTCTACCTCGCCACTTCTCGCACCTCCACCGATGTCTCAGCCGTGAAATCCGCGGAGACATCATTATCAAACTCAAAACAACTCCAAAGAGAACAGAGAATTCTTTCTTCTCTGTCCTCTCCTTACATAGTTAGCTACAAAGGTTGCAACATTACAAAGGAAAATAACAAAAAATTGTTCAATCTTTTCATGGAGTACATGCCATTTGGAAACCTCTCTCAGGCGACTTGCGGTGGCCGGCTCAACGAGACGACGATATCACACTACACAAGACAAATTTTGGAAGGACTTGAATATTTGCATTCAAAAGGTATTGTGCATTGTGATATCAAAGGTAGTAACATATTGGTTTGTGAAAAAGGAGTTAAAATTGGAGACTTTGGCTGTGCAAAAATGATCGATGAAATTGCGCCGGTCGCCGGAACTCCATTGTATATGGCGCCGGAAGTGGCGCGCGGCGAAGAACAAGGGTACCCTTGTGATGTTTGGTCACTTGGATGCACAATTGTTGAAATGGCAACTGGTTTTTCACCTTGGTCCAATGTAGATGACCCTGTTCATGTTCTGTTTCGTGTTGCATATTCCGATGAAGTTCCTATGATTCCTTGTTTTTTGTCTGAACAAGCTAAGGATTTCTTGGAAAAGTGTTTTATGAGAAATTCTAATGAGAGATGGAGTTGTAGTGAATTGTTGAAACATCCATTTCTTGCTGAATTTGATTCTGGTGTTGAGAAAATTCAAGAATTTGATACATGTTCACCAACTAGTATTCTTGAACAAGGCTTTTGGAATTGTGATGAAGATTCAGAAAGTTTATTTTTTGATGATTTGGGTAAGACTAGTTTTGTGAATTGTCCTAATGGTAGGATAAAAAAGTTAGCTTTATGTTCAAGGGATCATCCATGTTGGAAATGGGGTGATGAGAATTGGATCACAATTAGAGGGAATGATGCAGATGCAGAGGTTTCAATTAGTGATGATTTAGATAAAAGTGATTTTAGTGGTAAAATTAGTAGTGATTATTTTTGTGAGGATTATAATAATTGTAAGATTAAGGATGTTAGTTTTTTAGTTAATAGTCTTAATTTTGAGAGAGGCATTGGAAGGTTGATGCATCATTCAACATTAGATTTTTTATAA 1188 0.3822 MEWTRGNIIGHGSSATVYLATSRTSTDVSAVKSAETSLSNSKQLQREQRILSSLSSPYIVSYKGCNITKENNKKLFNLFMEYMPFGNLSQATCGGRLNETTISHYTRQILEGLEYLHSKGIVHCDIKGSNILVCEKGVKIGDFGCAKMIDEIAPVAGTPLYMAPEVARGEEQGYPCDVWSLGCTIVEMATGFSPWSNVDDPVHVLFRVAYSDEVPMIPCFLSEQAKDFLEKCFMRNSNERWSCSELLKHPFLAEFDSGVEKIQEFDTCSPTSILEQGFWNCDEDSESLFFDDLGKTSFVNCPNGRIKKLALCSRDHPCWKWGDENWITIRGNDADAEVSISDDLDKSDFSGKISSDYFCEDYNNCKIKDVSFLVNSLNFERGIGRLMHHSTLDFL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03678 395 CDD STKc_MAPKKK 2 252 - -
Trre12g03678 395 Pfam Protein kinase domain 5 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03678 395 Gene3D Transferase(Phosphotransferase) domain 1 2 286 - -
Trre12g03678 395 FunFam Mitogen-activated protein kinase kinase kinase 17 2 305 - -
Trre12g03678 395 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03678 395 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 278 - -
Trre12g03678 395 SUPERFAMILY Protein kinase-like (PK-like) 3 260 IPR011009 -
Trre12g03678 395 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Trre12g03678 395 SMART serkin_6 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03678 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03678 Trre-Chr12 52689881 52691068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03678 1 309 MAP Kinase Kinase Kinase AT2G32510 50.151 9.05e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre12g03678 Pkinase 6.6e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03678 K20716 - gmx:100797801 493.812