Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre12g03677 | ATGGATACCACAATTAACAATAACAAAAATAAGTCTCCATCTACAACAATCCCTTTTCAAGTCAACCTTACCTCTTCCAATGACTCTTCTCCTTCACTTTCTGATCATGAAAATCGACCCATCATCAATGAACTTGACTTTTTCTCTCAAAATAATAACCATGAAAACCTTGCCTCTTCTTCCACCTCTGCACCTCCTTATCATCATATACATGATCATTACACCAATCCTTCTTCTCTCTTGGAATTGAAAGTAAACACTAGTTTGAATCTTCTTACCACCAACGCAAGCAATGATCAATCTATGGTGGAGGCCGACATACCAAGTAATCCAGAAGACAAAAGAGGTCAACATGAGGCTGTTGTTCTTCAAGGTGAGCTTGAGAGATTGAAAGTAGAGAATCATCAACTGAGAAACATGCTCGAAGAGCGCAATCGGAATTACAACACATTGCAGATGCATTTGATGAGTTTGATGCAAGAAAGGAAGGTAGAGGATTGTAATGAAGATAAAAAACAAGAAGTGAAACAAAATGGAAATGGTGGATTTTTGGTTCCAAGGCAATTTATGGATCTTGGATTAGCTACTAATAATTCTAATGTTGCTGCTGATGAACCAAGAAGTCAAGATAAGTCAAAAGCACTTGCAAACAACAATGAAGAAGGTTCCAAGGATGAAGCACTTGTGTCTGATCATGGTATGAAGGAATCTGATAAGGGAAATGAAAGAGACGATAGTCCTCCGAATCGAGTTTTAGCTGCTAATAATAGTAATAATGTTCCAAATTTTAGTCCTCAAACTAATGTTGCACAAGCTGAGGCCACTATGAGGAAAGCACGAGTTTCGGTTCGATCTCGATCAGAGGCTGCTATGATCAATGATGGGTGTCAATGGAGAAAGTATGGACAGAAAATGGCGAAAGGAAACCCGTGTCCTCGAGCTTATTATCGATGCACTATGGCTCACGGCTGTCCAGTGAGAAAACAGGTACAAAGATGTGCTGAAGACAGATCAATACTGATAACAACATATGAAGGAAATCACATTCATGCATTGCCACCAGCAGCTATGGAAATGGTACAAACAACATCAGCAGCAGCAAGAATGCTTTTATCAGGACCAATGACAAGTCCTGATGGCCTAATGAATCCAAATTTCCTCACAAGAGCAATCCTTCCTTATTCATCAAGCATAGCAACTATCTCGGCATCAGCGCCATTTCCAACTGTTACATTAGACTTAACCGAGCCACCGAATTCAAACCAGTTCCCTAACAATAAAAACACAAACCAATTCCAATTTCCGTTCGCTCAAAATTTCGCAAACTCATTACTACCTCAGATATTCGGTCAAACATTGCTTAACCAATCAACATTTTCAGGACTACAAATGTCTCAAGATGCAGAAAATTCTCAATTGGGTAATCAATCTCAGCAACAACTTGCTGATACAGTTACTGCTATTGCATCTGATCCTAACTTTACTACAGCATTGGCAGCAGCTATTACTTCCATTATTGGTGCTGCACAACCAAACAATGGTAACAACAGTACTATTAATAATGGTAACAGTACTATAGCCAACAATAATAATGGCAATGTTACAACTAATAACAATGCCAATGGAAGCAATAAAGCCAACAATCCTAATTCATCAGGAAACTAG | 1665 | 0.388 | MDTTINNNKNKSPSTTIPFQVNLTSSNDSSPSLSDHENRPIINELDFFSQNNNHENLASSSTSAPPYHHIHDHYTNPSSLLELKVNTSLNLLTTNASNDQSMVEADIPSNPEDKRGQHEAVVLQGELERLKVENHQLRNMLEERNRNYNTLQMHLMSLMQERKVEDCNEDKKQEVKQNGNGGFLVPRQFMDLGLATNNSNVAADEPRSQDKSKALANNNEEGSKDEALVSDHGMKESDKGNERDDSPPNRVLAANNSNNVPNFSPQTNVAQAEATMRKARVSVRSRSEAAMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAHGCPVRKQVQRCAEDRSILITTYEGNHIHALPPAAMEMVQTTSAAARMLLSGPMTSPDGLMNPNFLTRAILPYSSSIATISASAPFPTVTLDLTEPPNSNQFPNNKNTNQFQFPFAQNFANSLLPQIFGQTLLNQSTFSGLQMSQDAENSQLGNQSQQQLADTVTAIASDPNFTTALAAAITSIIGAAQPNNGNNSTINNGNSTIANNNNGNVTTNNNANGSNKANNPNSSGN | 554 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre12g03677 | 554 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Trre12g03677 | 554 | FunFam | probable WRKY transcription factor 31 | 277 | 354 | - | - | |
Trre12g03677 | 554 | ProSiteProfiles | WRKY domain profile. | 287 | 353 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Trre12g03677 | 554 | Pfam | WRKY DNA -binding domain | 293 | 350 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Trre12g03677 | 554 | Coils | Coil | 120 | 147 | - | - | |
Trre12g03677 | 554 | MobiDBLite | consensus disorder prediction | 200 | 265 | - | - | |
Trre12g03677 | 554 | MobiDBLite | consensus disorder prediction | 165 | 184 | - | - | |
Trre12g03677 | 554 | MobiDBLite | consensus disorder prediction | 250 | 265 | - | - | |
Trre12g03677 | 554 | Gene3D | WRKY domain | 277 | 354 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Trre12g03677 | 554 | MobiDBLite | consensus disorder prediction | 217 | 246 | - | - | |
Trre12g03677 | 554 | MobiDBLite | consensus disorder prediction | 509 | 554 | - | - | |
Trre12g03677 | 554 | SUPERFAMILY | WRKY DNA-binding domain | 285 | 353 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Trre12g03677 | 554 | SMART | WRKY_cls | 292 | 352 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Trre12g03677 | 554 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 91 | 522 | IPR044810 | GO:0003700 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre12g03677 | Trre-Chr12 | 52672457 | 52676050 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre12g03677 | 85 | 514 | WRKY Transcription Factor Family | AT1G62300 | 49.556 | 6.49e-120 | 363 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Trre12g03677 | WRKY | 1.4e-23 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre12g03677 | - | - | tpra:123897783 | 750.74 |