Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03677 ATGGATACCACAATTAACAATAACAAAAATAAGTCTCCATCTACAACAATCCCTTTTCAAGTCAACCTTACCTCTTCCAATGACTCTTCTCCTTCACTTTCTGATCATGAAAATCGACCCATCATCAATGAACTTGACTTTTTCTCTCAAAATAATAACCATGAAAACCTTGCCTCTTCTTCCACCTCTGCACCTCCTTATCATCATATACATGATCATTACACCAATCCTTCTTCTCTCTTGGAATTGAAAGTAAACACTAGTTTGAATCTTCTTACCACCAACGCAAGCAATGATCAATCTATGGTGGAGGCCGACATACCAAGTAATCCAGAAGACAAAAGAGGTCAACATGAGGCTGTTGTTCTTCAAGGTGAGCTTGAGAGATTGAAAGTAGAGAATCATCAACTGAGAAACATGCTCGAAGAGCGCAATCGGAATTACAACACATTGCAGATGCATTTGATGAGTTTGATGCAAGAAAGGAAGGTAGAGGATTGTAATGAAGATAAAAAACAAGAAGTGAAACAAAATGGAAATGGTGGATTTTTGGTTCCAAGGCAATTTATGGATCTTGGATTAGCTACTAATAATTCTAATGTTGCTGCTGATGAACCAAGAAGTCAAGATAAGTCAAAAGCACTTGCAAACAACAATGAAGAAGGTTCCAAGGATGAAGCACTTGTGTCTGATCATGGTATGAAGGAATCTGATAAGGGAAATGAAAGAGACGATAGTCCTCCGAATCGAGTTTTAGCTGCTAATAATAGTAATAATGTTCCAAATTTTAGTCCTCAAACTAATGTTGCACAAGCTGAGGCCACTATGAGGAAAGCACGAGTTTCGGTTCGATCTCGATCAGAGGCTGCTATGATCAATGATGGGTGTCAATGGAGAAAGTATGGACAGAAAATGGCGAAAGGAAACCCGTGTCCTCGAGCTTATTATCGATGCACTATGGCTCACGGCTGTCCAGTGAGAAAACAGGTACAAAGATGTGCTGAAGACAGATCAATACTGATAACAACATATGAAGGAAATCACATTCATGCATTGCCACCAGCAGCTATGGAAATGGTACAAACAACATCAGCAGCAGCAAGAATGCTTTTATCAGGACCAATGACAAGTCCTGATGGCCTAATGAATCCAAATTTCCTCACAAGAGCAATCCTTCCTTATTCATCAAGCATAGCAACTATCTCGGCATCAGCGCCATTTCCAACTGTTACATTAGACTTAACCGAGCCACCGAATTCAAACCAGTTCCCTAACAATAAAAACACAAACCAATTCCAATTTCCGTTCGCTCAAAATTTCGCAAACTCATTACTACCTCAGATATTCGGTCAAACATTGCTTAACCAATCAACATTTTCAGGACTACAAATGTCTCAAGATGCAGAAAATTCTCAATTGGGTAATCAATCTCAGCAACAACTTGCTGATACAGTTACTGCTATTGCATCTGATCCTAACTTTACTACAGCATTGGCAGCAGCTATTACTTCCATTATTGGTGCTGCACAACCAAACAATGGTAACAACAGTACTATTAATAATGGTAACAGTACTATAGCCAACAATAATAATGGCAATGTTACAACTAATAACAATGCCAATGGAAGCAATAAAGCCAACAATCCTAATTCATCAGGAAACTAG 1665 0.388 MDTTINNNKNKSPSTTIPFQVNLTSSNDSSPSLSDHENRPIINELDFFSQNNNHENLASSSTSAPPYHHIHDHYTNPSSLLELKVNTSLNLLTTNASNDQSMVEADIPSNPEDKRGQHEAVVLQGELERLKVENHQLRNMLEERNRNYNTLQMHLMSLMQERKVEDCNEDKKQEVKQNGNGGFLVPRQFMDLGLATNNSNVAADEPRSQDKSKALANNNEEGSKDEALVSDHGMKESDKGNERDDSPPNRVLAANNSNNVPNFSPQTNVAQAEATMRKARVSVRSRSEAAMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAHGCPVRKQVQRCAEDRSILITTYEGNHIHALPPAAMEMVQTTSAAARMLLSGPMTSPDGLMNPNFLTRAILPYSSSIATISASAPFPTVTLDLTEPPNSNQFPNNKNTNQFQFPFAQNFANSLLPQIFGQTLLNQSTFSGLQMSQDAENSQLGNQSQQQLADTVTAIASDPNFTTALAAAITSIIGAAQPNNGNNSTINNGNSTIANNNNGNVTTNNNANGSNKANNPNSSGN 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03677 554 MobiDBLite consensus disorder prediction 1 37 - -
Trre12g03677 554 FunFam probable WRKY transcription factor 31 277 354 - -
Trre12g03677 554 ProSiteProfiles WRKY domain profile. 287 353 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g03677 554 Pfam WRKY DNA -binding domain 293 350 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g03677 554 Coils Coil 120 147 - -
Trre12g03677 554 MobiDBLite consensus disorder prediction 200 265 - -
Trre12g03677 554 MobiDBLite consensus disorder prediction 165 184 - -
Trre12g03677 554 MobiDBLite consensus disorder prediction 250 265 - -
Trre12g03677 554 Gene3D WRKY domain 277 354 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre12g03677 554 MobiDBLite consensus disorder prediction 217 246 - -
Trre12g03677 554 MobiDBLite consensus disorder prediction 509 554 - -
Trre12g03677 554 SUPERFAMILY WRKY DNA-binding domain 285 353 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre12g03677 554 SMART WRKY_cls 292 352 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g03677 554 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 91 522 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03677 Trre-Chr12 52672457 52676050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03677 85 514 WRKY Transcription Factor Family AT1G62300 49.556 6.49e-120 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre12g03677 WRKY 1.4e-23 CL0274