Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03666 ATGATATGCTTCGGTGAGAAAAATGTTTTAGGACATAGAGGCTTTGGAAAGGTTTATAAAGGTGTCCTTGCTGATAGCACAAAAGTTGCTGTCAAAAGGTTAATCGAGTATGAAAGCCCTGGGGGAGATGCAACTTTCCAGCATGAAGTTGAGATGATAAGCGTAGCTGTGCATAGAAACCTGTTAAAGTTAATTTGGTTTTGTACAACTCCAACTGAACGTCTCTTAGTTTATCCCTTCATGCAGAACTTAAGTGTTGCCTATCGTCTACGAGAACTCAAACTTGGGGAACCTATTTTGGATTGGCCTACTAGAAAGCGAGTAGCTCTTGGAACTGCATGA 342 0.4094 MICFGEKNVLGHRGFGKVYKGVLADSTKVAVKRLIEYESPGGDATFQHEVEMISVAVHRNLLKLIWFCTTPTERLLVYPFMQNLSVAYRLRELKLGEPILDWPTRKRVALGTA 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03666 113 Gene3D Phosphorylase Kinase; domain 1 2 80 - -
Trre12g03666 113 ProSiteProfiles Protein kinase domain profile. 4 113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03666 113 Pfam Protein tyrosine and serine/threonine kinase 7 92 IPR001245 GO:0004672|GO:0006468
Trre12g03666 113 FunFam Somatic embryogenesis receptor kinase 1 2 80 - -
Trre12g03666 113 SUPERFAMILY Protein kinase-like (PK-like) 5 113 IPR011009 -
Trre12g03666 113 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 4 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03666 Trre-Chr12 52583673 52584339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03666 4 113 Receptor kinase-like Gene Family AT5G10290 80.000 3.51e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre12g03666 PK_Tyr_Ser-Thr 1.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03666 - - gmx:100793416 198.749