Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03665 ATGGGCCACATAGCTCCTCAATATTTGCCGACTGAAAAGTCTTCAGAAAGGACTGATGTTTTTGGTTATGGGATTATGCTTCTGGAGCTTTTTACTGGTCAACGTGCAATTGACTTCTCACATTTGGAAGAGGAAGATGATGTGTTGTTGCTTGACCATAAAATGGAACGAGAGAAAAGTCTAAAAACTATTGTTGATCGCAACCTAAATAAAAACTACAACATGCAAGAGGTAGAAATGATGATAAAAGTTGCATTATTGTGCACTCAAGCAACATCGGAGGACCGTCCCCTGATCTCTGAGGCTGTGAGAATGCTAGAAGTAGAAGGGTTGGCTGAAAGATGGGAGGAATGA 354 0.4096 MGHIAPQYLPTEKSSERTDVFGYGIMLLELFTGQRAIDFSHLEEEDDVLLLDHKMEREKSLKTIVDRNLNKNYNMQEVEMMIKVALLCTQATSEDRPLISEAVRMLEVEGLAERWEE 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03665 117 Gene3D Transferase(Phosphotransferase) domain 1 1 117 - -
Trre12g03665 117 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 117 - -
Trre12g03665 117 Pfam Protein tyrosine and serine/threonine kinase 4 105 IPR001245 GO:0004672|GO:0006468
Trre12g03665 117 SUPERFAMILY Protein kinase-like (PK-like) 2 106 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03665 Trre-Chr12 52582636 52583504 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03665 1 117 Receptor kinase-like Gene Family AT5G10290 78.151 1.39e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre12g03665 PK_Tyr_Ser-Thr 3e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03665 - - gmx:100793416 190.274