Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03664 ATGAAGGCAGCTAATGTATTACTTGATGAAGATTTTGATGCATTTGTCGGAGACTTTGGTTTGTCAAAGTTAGTAGATATTCAAAAGACTAATGTGACAACTCAAGTTCGTGGGACAATGGGCCACATAGCTCCTCAATATTTGCCGACTGAAAAGTCTTCAGAAAGGACTGATGTTTTTGGTTATGGGATTATGCTTCTGGAGCTTTTTACTGGTCAACGTGCAATTGACTTCTCACATTTGGAAGAGGAAGATGATGTGTTGTTGCTTGACCATAAAATGGAACGAGAGAAAAGTCTAAAAACTATTGTTGATCGCAACCTAAATAAAAACTACAACATGCAAGAGGTAGAAATGATGATAAAAGTTGCATTATTGTGCACTCAAGCAACATCGGAGGACCGTCCCCTGATCTCTGAGGCTGTGAGAATGCTAGAAGTAGAAGGGTTGGCTGAAAGATGGGAGGAATGA 471 0.397 MKAANVLLDEDFDAFVGDFGLSKLVDIQKTNVTTQVRGTMGHIAPQYLPTEKSSERTDVFGYGIMLLELFTGQRAIDFSHLEEEDDVLLLDHKMEREKSLKTIVDRNLNKNYNMQEVEMMIKVALLCTQATSEDRPLISEAVRMLEVEGLAERWEE 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03664 156 Gene3D Transferase(Phosphotransferase) domain 1 1 156 - -
Trre12g03664 156 Pfam Protein kinase domain 1 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03664 156 ProSiteProfiles Protein kinase domain profile. 1 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03664 156 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 156 - -
Trre12g03664 156 SUPERFAMILY Protein kinase-like (PK-like) 1 146 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03664 Trre-Chr12 52582636 52583621 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03664 1 156 Receptor kinase-like Gene Family AT5G10290 79.114 2.00e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre12g03664 Pkinase 4.3e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03664 - - gmx:100793416 256.144