Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03661 ATGGCCGAGGTTCCTGTGATTGAAGAGAATGAAACAAAGTCTGAAGCGCATTTGACTTCTGCTGCTGCTTTTGTGGAAGGTGGAATTCAGGATGCTTGTGATGATGCTTGCAGTATATGCCTTGAAGCTTTTATTGATAGTGATCCTTCAACGGTGACGAGTTGCAAGCATGAGTTTCATCTTCAATGTATTCTGGAATGGTGCCAAAGGAGTTCCCAGTGCCCCATGTGTTGGCAATCTATCAGTCTCAAGGATCCAACAGGCCAGGAATTGCTCGAGGGAGTTGAGAGAGAGAGGAACTTTAGGGTCAATCCGTCTAGAAATGCTACAATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCAAATGATGCTGATCTTGAAGAACGTATAATCCAACACTTAGCTGCTGCAGCAGCAATGGGGCGAGCACGCCATATTGCTAGAAGGGAAGGCCAGAGAAATAGGTCATCAGCTCAAGGTCGCCCACAATATTTGGTATTTTCAGCTCATCCTAATTCACCTCCCATGGCTCCGGCTTCTTCATCTCCACCTCAGAGAGGGGATGGTGAATCAACTCCTGCTATCACTCTATCTCCAACTTTTTCGACCGGAGAAGAACCACCACAGCTTACTTTAGTTCACCCAGTTCAAACCGACCAGGTTTCTGCTTCAGGATCCGGGTCCACGGCTCTTGCTAATGACAATCAGGGATTATCTTATAACAACAGGAGATCTCCTAATCAGTCTTCTCCAAGTAGCCAAGACAGAGCAGGACCATCAGATCTCCAGTCATTTTCAGAATCTCTGAAATCAAAATTAAATGCCGTGTCTACAAGATACAAAGAGTCAATTTCCAAGAGCACAAGAGGGTGGAAGGAGAGGTGGTTCTCACGGAACAGCTCTGTAACTGATCTTGGATCTGAAGTTAGGAGAGAAGTTAATGCAGGAATTGCAACTGTGTCACGAATGATGGAACGCAGAGATAATAATAGAGCCAGTAGCAATTCTTCTCCAAGTAATTCAGAGGATGGTCCAGTTCAGGGATCAAATGATCGGCATTTAACAGATACTGAAAGGGACAGTCCTTCGATAGACAATAACACCAAAACATCTTGCACTGCAGGTTCTAGTTCAAATTAA 1164 0.4459 MAEVPVIEENETKSEAHLTSAAAFVEGGIQDACDDACSICLEAFIDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQSISLKDPTGQELLEGVERERNFRVNPSRNATIFHHPTLGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPQYLVFSAHPNSPPMAPASSSPPQRGDGESTPAITLSPTFSTGEEPPQLTLVHPVQTDQVSASGSGSTALANDNQGLSYNNRRSPNQSSPSSQDRAGPSDLQSFSESLKSKLNAVSTRYKESISKSTRGWKERWFSRNSSVTDLGSEVRREVNAGIATVSRMMERRDNNRASSNSSPSNSEDGPVQGSNDRHLTDTERDSPSIDNNTKTSCTAGSSSN 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03661 387 MobiDBLite consensus disorder prediction 192 292 - -
Trre12g03661 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 86 IPR013083 -
Trre12g03661 387 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 14 86 - -
Trre12g03661 387 SUPERFAMILY RING/U-box 30 84 - -
Trre12g03661 387 SMART ring_2 37 77 IPR001841 -
Trre12g03661 387 MobiDBLite consensus disorder prediction 174 297 - -
Trre12g03661 387 ProSiteProfiles Zinc finger RING-type profile. 37 77 IPR001841 -
Trre12g03661 387 FunFam E3 ubiquitin-protein ligase RHF2A 8 111 - -
Trre12g03661 387 Pfam Ring finger domain 36 77 IPR001841 -
Trre12g03661 387 MobiDBLite consensus disorder prediction 324 387 - -
Trre12g03661 387 MobiDBLite consensus disorder prediction 338 359 - -
Trre12g03661 387 MobiDBLite consensus disorder prediction 372 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03661 Trre-Chr12 52554730 52557581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03661 34 85 C3H Transcription Factor Family AT5G15790 44.231 6.18e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03661 K19043 - gmx:100814908 592.808