Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03657 ATGTCAATGGATATGAATATGAATATGATGGGAAATGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACTACTCTAGCGGTTAGTGTTCCATGCAGTAGCTTGTTGACTATAGTGACAGTTAGATGTGGACATTGTGCTAATTTGCTTTCAGTTAACATGGGAGCAGCATCACTTCAATCTTTTCCTCCTCAACAAGATCATCATCATCATTCTCAGTTTCAGAAACAGCAGCTTGTAAACTGTCATCAAGAAGCAAGTAGGAAGGAAGTTGTAGGATCATCATCTTCATCATCATCTTCATCTTCAAAATCCAAAGCTTTTCAGCATTTAGTCCATGAGCAACCTAGGACTCCTCCGATTCGTCCTCCTGAGAAGAGACAACGTGTTCCTTCTGCTTACAATCGGTTCATTAAGGAGGAAATACAAAGAATTAAGGCTGGTAATCCAGATATAAGTCACAGGGAAGCATTTAGCACAGCAGCTAAAAACTGGGCACATTTTCCTCACATTCACTTTGGATTAAAGTTGGATGCTAGCAAGCAAGCAAAATTGGACCATGGAGTTGGAGAGGCTACTCAAAAGTCTAATGGATTTTATTGA 606 0.3977 MSMDMNMNMMGNERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGAASLQSFPPQQDHHHHSQFQKQQLVNCHQEASRKEVVGSSSSSSSSSSKSKAFQHLVHEQPRTPPIRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSTAAKNWAHFPHIHFGLKLDASKQAKLDHGVGEATQKSNGFY 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03657 201 MobiDBLite consensus disorder prediction 86 131 - -
Trre12g03657 201 MobiDBLite consensus disorder prediction 86 110 - -
Trre12g03657 201 FunFam Axial regulator YABBY 121 191 - -
Trre12g03657 201 PANTHER PROTEIN YABBY 6-RELATED 8 185 IPR006780 GO:0007275
Trre12g03657 201 SUPERFAMILY HMG-box 116 169 IPR036910 -
Trre12g03657 201 CDD HMG-box_SF 130 166 - -
Trre12g03657 201 Gene3D High mobility group box domain 113 186 IPR036910 -
Trre12g03657 201 Pfam YABBY protein 12 176 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03657 Trre-Chr12 52482287 52489764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03657 1 201 C2C2-YABBY Transcription Factor Family AT1G08465 61.765 4.71e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre12g03657 YABBY 1.5e-73 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03657 K25796 - gmx:100785458 278.1