Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03655 ATGGATCCCTTGATCCGCAAGCTCCGCCGCCACCTTCTCCATTGGCTTCACCGATCTCGTTCCGGATCGGTGTTTTTTGTGAGGAGAATTTCGTATAAAGAAGTTAGAAAAGCAACTGATAGTTTTCAAAGAATTGTTTATAGCAATTCTGAAGTTTCTGCATATGCTGCGAATTTTGGTGATGGTGGTGTTTGTTTAGTGAAAGAAGTTAAAGAATTTGATAAAGGAAATGATGAGAATTTTCATAGACAAGTGCAGTTGTTAGGACGTTTGCATCATCGCCACCTTCTTTCTCTCAAAGGCTTTTCTTTGGGACACAATCGCAAGAGCAAAAGATTACTTATATTTGACAACATAGAAAATGGAAGCTTAAAGGAACATCTCAATGATCCCTTGAAGACTCCCTTAAATTGGAGGACAAGGTTGAAGATTGCTAATGGTGTTGTGGCTGCACTGGAGTACTTGTTTCTTTTCAGTGAGCCACCAATAAGTCATGTCTCTATCAGCTCTAGCAATATTATGTTAGATGAAAACTTCACCCCAAAACTATCTGATTTTGGCCTTCTTACTGGTGGAAGTTCTGGCTTGATACCACCATACTCCCAAGATAGCATGGGACAGGAAAGTTGCAAGATTATATTCCAACTTGGAGTTCTCATACTGGAACTAGTCACCGGTCAGTCTTCAGAGATGGAAGGTTCTGATTTAATTGAATGGATTCAAGAATCCCGATTTTTCAGTTCAATAGATAAGATGTTAGACCCTGATCTCGGAAACAATTATGACTGTACGGAGCTTAAAAGTCTTCTAGCTGTGGCAAAATTATGTATCAAATCATGGGACAAGCCTTCATATACAATTCCTCAGTTATTTCGGTATCTCCAAAAGGAGACTGATATTCCCCAAGATTAG 912 0.3936 MDPLIRKLRRHLLHWLHRSRSGSVFFVRRISYKEVRKATDSFQRIVYSNSEVSAYAANFGDGGVCLVKEVKEFDKGNDENFHRQVQLLGRLHHRHLLSLKGFSLGHNRKSKRLLIFDNIENGSLKEHLNDPLKTPLNWRTRLKIANGVVAALEYLFLFSEPPISHVSISSSNIMLDENFTPKLSDFGLLTGGSSGLIPPYSQDSMGQESCKIIFQLGVLILELVTGQSSEMEGSDLIEWIQESRFFSSIDKMLDPDLGNNYDCTELKSLLAVAKLCIKSWDKPSYTIPQLFRYLQKETDIPQD 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03655 303 Pfam Protein tyrosine and serine/threonine kinase 65 189 IPR001245 GO:0004672|GO:0006468
Trre12g03655 303 Gene3D Transferase(Phosphotransferase) domain 1 119 301 - -
Trre12g03655 303 ProSiteProfiles Protein kinase domain profile. 10 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03655 303 PANTHER OS01G0253100 PROTEIN 27 297 - -
Trre12g03655 303 SUPERFAMILY Protein kinase-like (PK-like) 23 266 IPR011009 -
Trre12g03655 303 FunFam probable receptor-like protein kinase At1g49730 213 302 - -
Trre12g03655 303 FunFam Protein kinase superfamily protein 16 117 - -
Trre12g03655 303 Gene3D Phosphorylase Kinase; domain 1 17 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03655 Trre-Chr12 52444919 52447088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03655 22 299 Receptor kinase-like Gene Family AT3G19300 37.124 3.72e-57 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Trre12g03655 PK_Tyr_Ser-Thr 9.7e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03655 - - aprc:113853565 457.603