Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03653 ATGTTTGGAAGAGCACCTAAGAAAAGTGATAACACTAAATACTATGAAATTCTTGGCGTTTCCAAAAGCGCTTCTCCTGATGATTTGAAGAATGCTTACAAAAAAGCTGCTATCAAGAATCATCCTGATATGGGTGGAGATCCTGAAAAGTTCAAAGAGCTTGCACAAGCTTATGAGGTTTTGAGTGATCCTGAGAAGCGTGAGATATATGATCAGTATGGTGAAGATGCCCTTAAGGAAGGAATGGGTGGTGGCGGCGGTGGCCATGACCCATTTGATATCTTTTCGTCTTTCTTTGGTGGTGGTGGTGGTGGATTTCCAGGTGGTGGTAGCAGAGGAAGGAGGCAGAGACGTGGTGAAGATGTTGTTCATCCTTTGAAGGTTTCTTTGGAGGATCTTTACCTTGGGACATCTAAGAAGCTTTCTCTTTCACGGAATGTCTTGTGCTCATTCAAAACACATCTAACAAATTCAATGTTCTCAACCCCATTTGTTCTCACTTTCTTTCTCCTCCTCTCTCTCCCAATCATTTTCTTTCTCGCTCCTCGTATCCTCCCACCACACCCTACCCCTATCCCCATCTCACCCTCCGATGAACTCGATGATATCAACCTCTTCAACACCGCTATCTCTCATTCTTCATCATCATCATCACCCCCTAATTCCATTTCACACCCCTCCAAATTCTTTCACCTCTCTTCCAAAAACCCTAACCTCAAAATCGCTTTTCTTTTCCTAACTAACACAGATCTCCATTTTACCCCTCTATGGAACATCTTCTTCCAAACAACACCTACAAAACTTTTCAACATTTACGTTCATTCAGACCCACGCGCTAATATAACGCGCGTTAACAACCCTCTCTTCAAATTCATTTCTTCCAAAAACACCTACCGTGCTTCCCCAACTCTCATCTCCGCCACGCGCCGTTTACTCGCTACCGCCATCCTCGACGATCCTTCCAATGCTTATTTCATCGTTCTTTCGCAATACTGTATACCTCTTCACTCTTTCAATTACATTTACCGATCACTTTTTCTTTCTCCGACGTTCGATTTAACCGATTCCGAATCGACGAAATTCGGTGTTCGGTTAAAATATAAATCGTTTGTTGAAATTATCTCTAACGGTCCTAAATTATGGAAACGTTATATCGCTAGAGGACGTTATGCGATGATGCCGGAAGTTCCGTTTGAAAAATTTCGTGTTGGATCGCAGTTTTTTACCCTAACGCGTAAACATGCTTTGGTTGTTGTTAAAGATAGAACGTTATGGAGGAAATTCAAGGTTCCTTGTTATCGTGATGATGAATGTTATCCTGAGGAACATTATTTTCCGACGCTATTGTCAATGGCAGATCCTGATGGTGTTACTAGCTATACTCTTACGAATGTTAATTGGACTGGAACTGTTAATGGTCATCCTCATACTTATCAACCGGAGGAAGTTTCGCCGGAGTTGATTCTCCGGTTGAGGAAATCGAATCATTCCGAGTCTTATTTGTTTGCGAGGAAATTTGTTCCTGATTGCTTGGAACCTTTGATGAACATAGCTAAATCAGTCATTTTCAAAGACTGA 1578 0.4189 MFGRAPKKSDNTKYYEILGVSKSASPDDLKNAYKKAAIKNHPDMGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFSSFFGGGGGGFPGGGSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVLCSFKTHLTNSMFSTPFVLTFFLLLSLPIIFFLAPRILPPHPTPIPISPSDELDDINLFNTAISHSSSSSSPPNSISHPSKFFHLSSKNPNLKIAFLFLTNTDLHFTPLWNIFFQTTPTKLFNIYVHSDPRANITRVNNPLFKFISSKNTYRASPTLISATRRLLATAILDDPSNAYFIVLSQYCIPLHSFNYIYRSLFLSPTFDLTDSESTKFGVRLKYKSFVEIISNGPKLWKRYIARGRYAMMPEVPFEKFRVGSQFFTLTRKHALVVVKDRTLWRKFKVPCYRDDECYPEEHYFPTLLSMADPDGVTSYTLTNVNWTGTVNGHPHTYQPEEVSPELILRLRKSNHSESYLFARKFVPDCLEPLMNIAKSVIFKD 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03653 525 FunFam dnaJ protein homolog 10 111 - -
Trre12g03653 525 CDD DnaJ 14 63 IPR001623 -
Trre12g03653 525 PRINTS DnaJ domain signature 66 85 IPR001623 -
Trre12g03653 525 PRINTS DnaJ domain signature 46 66 IPR001623 -
Trre12g03653 525 PRINTS DnaJ domain signature 15 33 IPR001623 -
Trre12g03653 525 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Trre12g03653 525 SUPERFAMILY Chaperone J-domain 8 111 IPR036869 -
Trre12g03653 525 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 174 516 IPR044174 GO:0016757
Trre12g03653 525 Pfam DnaJ domain 13 71 IPR001623 -
Trre12g03653 525 Pfam Core-2/I-Branching enzyme 241 491 IPR003406 GO:0016020|GO:0016757
Trre12g03653 525 SMART dnaj_3 12 66 IPR001623 -
Trre12g03653 525 Gene3D DnaJ domain 10 108 IPR036869 -
Trre12g03653 525 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Trre12g03653 525 Gene3D - 110 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03653 Trre-Chr12 52437573 52439624 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03653 8 73 C2H2 Transcription Factor Family AT1G74250 41.333 1.60e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03653 - - gmx:100819878 565.844