Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03651 ATGTTTGGAAGAGCACCTAAGAAAAGCGATAACACTAAATACTATGAAATTCTTGGCGTTTCCAAAAGCGCTTCTCCTGATGATTTGAAGAAAGCTTACAAAAAAGCTGCTATCAAGAATCATCCTGATAAGGGTGGCGATCCTGAAAAGTTCAAAGAGCTTGCACAAGCCTATGAGGTTTTGAGTGATCCTGAGAAGCGTGAGATATATGATCAGTATGGTGAAGATGCTCTTAAGGAAGGAATGGGTGGTGGCGGCGGTGGCCATGACCCATTTGATATCTTTTCGTCTTTCTTTGGTGGTGGTGGTGGTGGATTTCCAGGTGGTGGTAGCAGAGGAAGGAGGCAGAGACGTGGTGAAGATGTTGTTCACCCTTTGAAGGTTTCTTTGGAGGATCTTTACCTTGGGACATCTAAGAAGCTTTCTCTTTCACGAAATGTCTTGTGCTCAAAGTGCAATGGGAAAGGTTCGAAATCTGGGGCTTCGATGACTTGTGCTGGTTGTCAAGGTTCTGGTATGAAGGTTTCTATGAGGCATCTAGGTGCTAATATGATTCAGCAAATGCAACATCCTTGCAATGAATGTAAGGGAACTGGAGAGACAATCAATGACAAAGATCGATGCACACAGTGCAAGGGAGAGAAGGTTGTTCAACAGAAGAAAGTCCTTGAAGTTCATGTGGAGAAGGGAATGCAGAATAGTCAGAAGATTACATTCCCTGGTGAAGCCGATGAAGCACCGGATACAATCACCGGAGATATTGTCTTTGTACTTCAACAGAAGGAACATCCCAAGTTCAAGAGAAAGGGCGAAGATCTTTTCGTAGAGCACACATTGTCGCTCACAGAGGCTTTATGCGGTTTCCAATTTGTGCTTACTCATTTGGATTCCCGGCAACTCTTGATTAAATCAAACCCTGGAGAAGTTGTTAAGCCTGATTCATACAAGGCAATCAATGATGAAGGAATGCCAATGTACCAGAGGCCTTTCATGAAGGGCAAGCTTTACATTCACTTCAATGTAGAGTTCCCTGAATCTTTGACTCCTGAACAGGTTAAGGCTTTGGAGACTATTCTTCCAGCAAGGCCTTCATCGCAGTTAACAGACATGGAGCTGGATGAATGTGAGGAGACAACACTTCATGATGTTAACATTGAAGAAGAGCATAGAAGGAGGCAACAAGCTCAACAGGAAGCATATGATGAGGATGATGATATGCCTGGTGGTGCTCAAAGAGTACAGTGTGCTCAGCAGTGA 1257 0.4383 MFGRAPKKSDNTKYYEILGVSKSASPDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFSSFFGGGGGGFPGGGSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVLCSKCNGKGSKSGASMTCAGCQGSGMKVSMRHLGANMIQQMQHPCNECKGTGETINDKDRCTQCKGEKVVQQKKVLEVHVEKGMQNSQKITFPGEADEAPDTITGDIVFVLQQKEHPKFKRKGEDLFVEHTLSLTEALCGFQFVLTHLDSRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRPFMKGKLYIHFNVEFPESLTPEQVKALETILPARPSSQLTDMELDECEETTLHDVNIEEEHRRRQQAQQEAYDEDDDMPGGAQRVQCAQQ 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03651 418 CDD DnaJ 14 63 IPR001623 -
Trre12g03651 418 CDD DnaJ_zf 149 215 IPR001305 GO:0031072|GO:0051082
Trre12g03651 418 SUPERFAMILY HSP40/DnaJ peptide-binding domain 266 355 IPR008971 GO:0006457|GO:0051082
Trre12g03651 418 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 146 218 IPR036410 -
Trre12g03651 418 SUPERFAMILY HSP40/DnaJ peptide-binding domain 120 264 IPR008971 GO:0006457|GO:0051082
Trre12g03651 418 Gene3D DnaJ domain 10 108 IPR036869 -
Trre12g03651 418 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Trre12g03651 418 MobiDBLite consensus disorder prediction 379 399 - -
Trre12g03651 418 FunFam dnaJ protein homolog 10 111 - -
Trre12g03651 418 FunFam Chaperone protein dnaJ 3 216 256 - -
Trre12g03651 418 CDD DnaJ_C 120 347 - -
Trre12g03651 418 Gene3D - 110 261 - -
Trre12g03651 418 PRINTS DnaJ domain signature 15 33 IPR001623 -
Trre12g03651 418 PRINTS DnaJ domain signature 46 66 IPR001623 -
Trre12g03651 418 PRINTS DnaJ domain signature 66 85 IPR001623 -
Trre12g03651 418 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 11 399 IPR044713 GO:0006457|GO:0030544
Trre12g03651 418 MobiDBLite consensus disorder prediction 379 418 - -
Trre12g03651 418 Hamap Chaperone protein DnaJ [dnaJ]. 10 370 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Trre12g03651 418 Gene3D - 149 215 - -
Trre12g03651 418 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Trre12g03651 418 SMART dnaj_3 12 66 IPR001623 -
Trre12g03651 418 FunFam Chaperone protein dnaJ 3 290 361 - -
Trre12g03651 418 Pfam DnaJ central domain 149 215 IPR001305 GO:0031072|GO:0051082
Trre12g03651 418 Gene3D - 263 345 - -
Trre12g03651 418 ProSiteProfiles Zinc finger CR-type profile. 136 220 IPR001305 GO:0031072|GO:0051082
Trre12g03651 418 FunFam DnaJ subfamily A member 2 149 215 - -
Trre12g03651 418 SUPERFAMILY Chaperone J-domain 8 111 IPR036869 -
Trre12g03651 418 Pfam DnaJ C terminal domain 123 344 IPR002939 -
Trre12g03651 418 Pfam DnaJ domain 13 71 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03651 Trre-Chr12 52401414 52403474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03651 14 73 C2H2 Transcription Factor Family AT1G74250 44.928 5.29e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03651 K09503 - gmx:547558 728.013