Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03647 ATGGATGTTGATTCTTCGATGGTTCCAGAGGCTGATCATGATCCTATTGTGGGGAATCAGACTGTTGCTTCTCCGGCGAGGGAGGTTGTAGAAGGAGAGCAGGTTAAGGAACAACCGGCGGTGGAGTCTGGTGGTGGATCTCAGGCGGAGGTGCAGCAACAGCAAGGGACGAATGATGTGCAGCAAGGTACGGTTGTTGGACCGAGGTTGGCGCCGAATTACACTGTGGTGAATGCGATTTTGGAGAAGAAGGAGGACGGTCCTGGGCCGAGGTGTGGACATACGTTGACGGCGGTTGCGGCTGTTGGTGAGGAGGGAACGCCGGGGTATATTGGTCCGAGGTTGATTTTGTTTGGTGGTGCTACTGCACTTGAAGGAAATTCCGCGGCTTCGGGGACTCCTTCATCAGCTGGAAATGCTGGAATACGTTTGGCTGGTGCCACGGCTGATGTCCACTGTTATGATGTCTTGACTAATAAATGGTCTAGGCTAACTCCCTATGGAGAACCTCCAACACCAAGGGCTGCCCATGTGGCAACTGCCGTAGGAACCATGGTGGTTATTCAGGGTGGTATTGGTCCTGCTGGTTTGTCGGCAGAAGACCTTCATGTTCTTGATCTCACTCAGCAATGGCCCCGATGGCATAGAGTGTCTGTTCAAGGCCCCGGACCAGGGTCACGCTATGGACATGTAATGGCTTTGGTTGGCCAGCGGTATCTTATGGCAATCGGAGGCAATGATGGAAAGAGACCTTTGGCTGATGTATGGGCTTTGGACACAGCTGCTAAGCCATATGAGTGGCGCAAGTTAGAGCCAGAAGGAGAGGGTCCTCCTCCATGCATGTATGCAACTGCAAGTGCACGCTCTGATGGGCTTCTTCTGCTTTGTGGAGGGAGGGATGCCAATAGTGTTCCATTGGCTAGTGCATATGGACTTGCTAAGCATAGAGATGGTCGTTGGGAATGGGCAATTGCCCCAGGTGTCTCACCATCTCCAAGATATCAGCATGCAGCGGTATTTGTTAATGCAAGGCTGCATGTGTCTGGTGGAGCTCTTGGTGGAGGACGGATGGTTGAAGACTCATCAAGTGTTGCAGTATTGGACACTGCTGCTGGTGTTTGGTGTGATACTAAATCTGTTGTTACCACTCCAAGAACTGGTAGATACAGTGCTGATGCAGCTGGCGGAGATGCGGAAGTTGAGCTGACTCGACGTTGTAGGCATGCAGCTGCTGCTGTTGGTGACCTGATTTTTATTTACGGTGGTCTACGTGGGGGAGTCTTGTTGGATGACCTACTTGCTGCTGAAGATCTTGCTGCTGCTGAAACAACAACTGCTGCTTCACATGCTGCTGCAGCAGCAGCTTCATCCAATGTACAAGCAGGACGCTTGCCTGGACGATATGGATTTGATGATAGGCCAAGGCAAACAATGACTGAAGTGGCTGCTGATGGTTCTGTTGTATTGGGAAATCCAGTTGCACCCCCAATGAATGGCGACGTTTATACTGACATTAGCACTGAAAATGCCATACTTCAGGGACCTCGTAGAACTGCCAAAGGAGTTGAGTATCTGGTGGAAGCATCTGCTGCAGAAGCTGAAGCTATTAGTGCCGCACTGGCTGCTGCCAAGGCAAGGCAAGAGAATGGAGAAGTTGAATTACCTGACAGAGACCGTGGGGCTGAGGCTACCCCAAGTGGGAAGCACACATCTTCCTTGATTAAGCCTGACTCTGTAGGGTCAAATAACAGTGCTTCTGGCGGAGTTCGGCTGCATCACAGAGCTGTAGTTATTGCTGCAGAGACTGGTGGCGCATTAGGTGGCATGGTTCGACAGCTTTCGATTGATCAATTTGAAAACGAAGGAAGGCGGGTCAGTTATGGGACTCCGGAAAATGCAACTGCTGCTAGAAAATTATTAGATCGGCAGATGTCCATCAATAGTGTGCCAAAAAAGGTTATAGCACACCTCTTAAAGCCTCGTGGATGGAAACCACCAGTACGCCGGCAATTTTTCTTAGATTGTAATGAAATTGCTGATCTTTGTGATAGTGCTGAGCGGATATTTTCAAGTGAACCAAGTGTTTTACAACTTAGTGCACCAATTAAAATATTTGGTGATTTACATGGGCAGTTTGGGGATCTCATGCGCCTTTTTGATGAGTATGGTGCACCATCAACTGCTGGTGACATTGCATATATCGATTATCTATTCCTAGGAGATTATGTTGATCGGGGACAGCACAGCTTGGAAACTATAACCCTTCTTCTTGCTCTGAAGGTCGAGTATCCAAACAATGTACATTTAATACGTGGAAACCATGAAGCTGCAGATATTAATGCCCTTTTTGGTTTTCGAATTGAATGTATTGAGAGGATGGGTGAGAGAGATGGAATTTGGACGTGGCATCGGATTAACCGGCTGTTTAATTGGCTTCCCCTTGCTGCTTTAATTGAAAAAAAGATTATTTGCATGCATGGAGGTATTGGTCGTTCAATAAATCATATAGAACAGATTGAGAATATTCAGCGACCAATTCCAATGGAAGCGGGGTCAATTGTGCTTATGGATCTGTTGTGGTCTGATCCTACAGAGAATGATAGCGTAGAAGGACTGCGGCCAAATGCTAGAGGTCCTGGATTAGTTACTTTTGGGCCTGATCGAGTCATGGAATTTTGCAACAACAATGATCTTCAGCTAATTGTCCGTGCACATGAATGTGTGATGGATGGGTTTGAGCGTTTTGCCCAGGGACATCTGATCACACTTTTCTCGGCTACAAATTATTGTGGCACTGCAAATAATGCCGGAGCAATATTAGTTTTGGGTAGAGACCTTGTTGTGGTTCCAAAACTGATTCATCCATTACCACCTGCAATTTCTTCACCAGAAACATCACCAGAAAGGCATATTGAAGATACATGGATGCAGGAGTTGAATGCTAACAGACCGCCAACACCAACTAGAGGTCGCCCCCCAGTTGTAAATGACAGAGGTTCCCTCGCTTGGATATAG 3015 0.4783 MDVDSSMVPEADHDPIVGNQTVASPAREVVEGEQVKEQPAVESGGGSQAEVQQQQGTNDVQQGTVVGPRLAPNYTVVNAILEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGNAGIRLAGATADVHCYDVLTNKWSRLTPYGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQWPRWHRVSVQGPGPGSRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTTPRTGRYSADAAGGDAEVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLAAEDLAAAETTTAASHAAAAAASSNVQAGRLPGRYGFDDRPRQTMTEVAADGSVVLGNPVAPPMNGDVYTDISTENAILQGPRRTAKGVEYLVEASAAEAEAISAALAAAKARQENGEVELPDRDRGAEATPSGKHTSSLIKPDSVGSNNSASGGVRLHHRAVVIAAETGGALGGMVRQLSIDQFENEGRRVSYGTPENATAARKLLDRQMSINSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLSAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWTWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHIEQIENIQRPIPMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPPVVNDRGSLAWI 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03647 1004 FunFam Serine/threonine-protein phosphatase 637 977 - -
Trre12g03647 1004 MobiDBLite consensus disorder prediction 45 64 - -
Trre12g03647 1004 Pfam Kelch motif 332 378 IPR011498 GO:0005515
Trre12g03647 1004 SUPERFAMILY Metallo-dependent phosphatases 658 964 IPR029052 -
Trre12g03647 1004 FunFam Serine/threonine-protein phosphatase 70 267 - -
Trre12g03647 1004 Pfam Calcineurin-like phosphoesterase 701 908 IPR004843 GO:0016787
Trre12g03647 1004 FunFam Serine/threonine-protein phosphatase 271 471 - -
Trre12g03647 1004 MobiDBLite consensus disorder prediction 549 564 - -
Trre12g03647 1004 SUPERFAMILY Kelch motif 146 434 IPR015915 GO:0005515
Trre12g03647 1004 SMART pp2a_7 673 957 IPR006186 GO:0016787
Trre12g03647 1004 MobiDBLite consensus disorder prediction 547 586 - -
Trre12g03647 1004 ProSitePatterns Serine/threonine specific protein phosphatases signature. 770 775 IPR006186 GO:0016787
Trre12g03647 1004 Gene3D - 637 975 IPR029052 -
Trre12g03647 1004 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 1004 - -
Trre12g03647 1004 MobiDBLite consensus disorder prediction 980 1004 - -
Trre12g03647 1004 Gene3D - 198 451 IPR015915 GO:0005515
Trre12g03647 1004 PRINTS Serine/threonine phosphatase family signature 807 833 IPR006186 GO:0016787
Trre12g03647 1004 PRINTS Serine/threonine phosphatase family signature 701 728 IPR006186 GO:0016787
Trre12g03647 1004 PRINTS Serine/threonine phosphatase family signature 736 763 IPR006186 GO:0016787
Trre12g03647 1004 PRINTS Serine/threonine phosphatase family signature 897 917 IPR006186 GO:0016787
Trre12g03647 1004 PRINTS Serine/threonine phosphatase family signature 769 793 IPR006186 GO:0016787
Trre12g03647 1004 PRINTS Serine/threonine phosphatase family signature 919 935 IPR006186 GO:0016787
Trre12g03647 1004 PIRSF STPPP_BSU1 34 1004 IPR012391 GO:0004721|GO:0009742
Trre12g03647 1004 Gene3D - 45 197 IPR015915 GO:0005515
Trre12g03647 1004 MobiDBLite consensus disorder prediction 565 586 - -
Trre12g03647 1004 MobiDBLite consensus disorder prediction 1 67 - -
Trre12g03647 1004 CDD MPP_Bsu1_C 653 955 IPR041758 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03647 Trre-Chr12 52368509 52381483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03647 665 900 Calmodulin-binding Proteins AT5G63870 29.412 1.44e-27 112