Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03643 ATGGATGAAATTCATGTTCCTTCTCATTTTCTCTGCCCAATTTCCCTCCAACTTATGAAAGATCCTGTTACTCTTTCCACAGGAATTACCTACGACAGAGAAAACATAGAAAAATGGTTATTTTCATTTCAAAACAAAACATGTCCTGTTACAAAATCATCTTTATTAGAAACCGATCTTAATAATCTTACACCAAATCACACTCTTCGTCGTTTGATTCAATCTTGGTGTACCCTTAATGCTTCATTTGGTGTTGAACGTATTCCAACACCAAAATCACCAATAGACAGAACACAAATTCTTAAACTCATCAATGAAGCTAAGAAATTCCCAGAAAAACAACATAGTTGTCTTGTAAAGCTTCGTTCGATCGTTTTCGAAAGCGAAAGGAATAAAAAATGCTTGGAATCTGCAGGTGCAATAGAGTTTTTAGCTTCAACAATGAAGAACAATTCAAATTCAAGTTCTTTGAGTGAAGCTGCTATTGAAATTCTGTTTCATCTTAATCCTTCTGAAGTTCATATCAAGAATTTGATAAACAATGAAAGCATTCAATTTATTGAATCATTGTTTCATGTTTTGAAGCTTGGAAGTTATCAATCTAGAGGTTATGCAACAATGCTATTGAAATCGGCGTTTGAAGTATCCGATCCGATTCAATTAATCAGCGTAAAAATAGCGCTTTTCGAAGAATTAATGAGAGTACTTATTGATAAGATTTCACAACAAGCTTCAAAAGCAGCATTGAAGTTAATTGTGGAGCTTTTACCATGGGGGCGAAACCGAATTAAAGCGGTTGAAGGTGGCGCGGTTTTAGTCCTCATTGAGCTTCTTTTCGATGTTTCGGAAAGAAGGGCGTGCGAATTGATTCTGACAGGTTTGGATCAACTATGTGGTTGCGCCGAAGGGCGTGCGGAGTTGTTGAATCATGGTGCAGGTGTTGCTATTGTGTCAAAGAAAATTTTGAGGGTTTCTCATGTTGCAAGTGATAGAGGAGTTAGAATTTTGAGTTCAATTTGTAGATATTCAGCAAATTCTAGAGTTTTACATGAAATGTTGCAAGTTGGTGCTGTTTCAAAGTTGTGTTTGGTTCTTCAAGTTGATAGCAATTTTAAGACTAAAGAAAAAGCTAAGGAGATTCTCAAATTGCATGCTGCTGTTTGGAAGAATTCTACATGTATTCCTGTTCCTTTGTTATCTTCTTATCCATGA 1212 0.3581 MDEIHVPSHFLCPISLQLMKDPVTLSTGITYDRENIEKWLFSFQNKTCPVTKSSLLETDLNNLTPNHTLRRLIQSWCTLNASFGVERIPTPKSPIDRTQILKLINEAKKFPEKQHSCLVKLRSIVFESERNKKCLESAGAIEFLASTMKNNSNSSSLSEAAIEILFHLNPSEVHIKNLINNESIQFIESLFHVLKLGSYQSRGYATMLLKSAFEVSDPIQLISVKIALFEELMRVLIDKISQQASKAALKLIVELLPWGRNRIKAVEGGAVLVLIELLFDVSERRACELILTGLDQLCGCAEGRAELLNHGAGVAIVSKKILRVSHVASDRGVRILSSICRYSANSRVLHEMLQVGAVSKLCLVLQVDSNFKTKEKAKEILKLHAAVWKNSTCIPVPLLSSYP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03643 403 CDD RING-Ubox_PUB 7 60 IPR045210 -
Trre12g03643 403 SMART Ubox_2 9 76 IPR003613 GO:0004842|GO:0016567
Trre12g03643 403 ProSiteProfiles U-box domain profile. 5 83 IPR003613 GO:0004842|GO:0016567
Trre12g03643 403 PANTHER WDSAM1 PROTEIN 3 395 IPR045185 GO:0061630
Trre12g03643 403 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Trre12g03643 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Trre12g03643 403 SUPERFAMILY ARM repeat 110 382 IPR016024 -
Trre12g03643 403 SUPERFAMILY RING/U-box 4 80 - -
Trre12g03643 403 Gene3D - 98 390 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03643 Trre-Chr12 52282191 52283402 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03643 2 403 U-box Gene Family AT2G35930 55.665 3.63e-161 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03643 - - gmx:100778012 635.565