Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03642 ATGAAAGAAAATGAAATTCCTCAATTTTTTCTTTGTCCCATTTCACTTCAAATCATGAAAAATCCTGTGACAACAATTACAGGCATAACATACAACAGAGAAAGCATTGAACAATGGTTGCTAACATCAAAAAGTTGCACATGTCCAATTACCAAACAAGCCTTACCAAGAAGCTCAGAGTTTTTGACACCAAATCACACCCTTCAAAGGTTAATTCAATCATGGCACTTACAAAATTCATCTGTTAGTGTTGATAAGATTATTCCAACCTCAACAATTGAAAATCTTGTGAAGAATCTTGATCATGAGTCATTAGAAAAATTACTTGCTCTTGCTTTAGAAAATGAGAGAAATAGAACATGCATGGTTGAAGCAGGAGTAGCAAAAGCTATTATTCAAAAAGTGATTATAAATAATTTTTTCAAGCAAGGTAAAACAACATCTCTTGAAGAAGCATTGAGAATTCTTCATTTAATTTTGCCTCTAGCCATCACCAATAATGACAACATCATCAACAACATCCAATGTTACATAGTTGATGACAATTTTGACTTAGTCAACTCGTTGACTTTGATTTTACAACTTCACATTGATAACAAAAATTTCAAGGTAATAAATGAAGCAATGATTGTATTAAAACTTATATTTGAGGTAAAAAATTCAACCTCTTTAGTTAATTTAAATGTTGATTTTTTTAGAGAAATAGTAAAAGTACTTAGAATTAGAAATAAAGCACTTTCTATTAAAGCTATGAAATCTGCATTGCATGTGTTATTACAAACATGCCCTTTAGGTAGAAATCGGTTGAAGATTGTGGAAGCTGGAGCTGTAAAAGAAATCATTGATCTTGCACTTGAAAAACAAGAAAAGAACCAAACAGAACTTATATTTATGGTTCTTGCAGATTTATGTTGTTGTGCTGATGGAAGAGAACAATTTGTGCAACATGCAGCAGGAATTGCAGTAATTTCTAAAAGAACATTAAGGGTTTCATCAACAACTGATGATTGTGCTCTTCAAATATTTTGTTTGATTTCTAAATATTGTGCTACAAATGATGTTGTTCAAGAAATGTTAAGGGTTGGTGCTGTTTCAAAACTTTGTATGGTTATGCAAGCTGATTGTGGTTCTTATTTGAAGGAAAAAGCTAGAGGTGTTCTTAGGTTACACTCTAATGTATGGAATAATTCTCCTTGTATTCAAGTTTATTTGTTAACTAGACACCAAAGGTTTGGTGAGTGA 1242 0.3156 MKENEIPQFFLCPISLQIMKNPVTTITGITYNRESIEQWLLTSKSCTCPITKQALPRSSEFLTPNHTLQRLIQSWHLQNSSVSVDKIIPTSTIENLVKNLDHESLEKLLALALENERNRTCMVEAGVAKAIIQKVIINNFFKQGKTTSLEEALRILHLILPLAITNNDNIINNIQCYIVDDNFDLVNSLTLILQLHIDNKNFKVINEAMIVLKLIFEVKNSTSLVNLNVDFFREIVKVLRIRNKALSIKAMKSALHVLLQTCPLGRNRLKIVEAGAVKEIIDLALEKQEKNQTELIFMVLADLCCCADGREQFVQHAAGIAVISKRTLRVSSTTDDCALQIFCLISKYCATNDVVQEMLRVGAVSKLCMVMQADCGSYLKEKARGVLRLHSNVWNNSPCIQVYLLTRHQRFGE 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03642 413 PANTHER WDSAM1 PROTEIN 4 401 IPR045185 GO:0061630
Trre12g03642 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 103 IPR013083 -
Trre12g03642 413 SUPERFAMILY ARM repeat 94 387 IPR016024 -
Trre12g03642 413 SUPERFAMILY RING/U-box 4 81 - -
Trre12g03642 413 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Trre12g03642 413 Gene3D - 179 402 IPR011989 -
Trre12g03642 413 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Trre12g03642 413 CDD RING-Ubox_PUB 7 58 IPR045210 -
Trre12g03642 413 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03642 Trre-Chr12 52275591 52276832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03642 2 400 U-box Gene Family AT2G35930 40.241 3.88e-91 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03642 - - gmx:100787419 497.278