Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03641 ATGGGTTTTTTGTTGAAAGAAGTTTTGAAGACTTTGTGTGGTAGGAATCAATGGTCTTATGCTGTGTTTTGGAAGATTGGTTGCAACAATTCTAAGCTATTAATATGGGAAGAATGCTATTATGAACCCTTGTCATGTCCTTCCCCTCATGGCATTGTTGGGATGTCAAATTTGTCTAATCCGAACGGGGAAGGAAGCTGGTTTTCCTCCGAGTCTCAATCGTCTCGTCTAGGAATACAAGAGGAAGATAGAGTCTCTTCTTTGATTAACAAAATGACAGCCAATAATTTAGTCATTGTTGCAGGTGAAGGTATAATTGGACGCGCTGCATTTACCAACAGTCATGAATGGATTCTCTTGAACAATTTTGCTAAAGGTGCATATCCACCGGAGGTATATGCTGAAATGCATCACCAATTTTTAGCTGGAATGCAGACAGTAGCAGTAATTCCTGTGCTTCCTCACGGAGTTATTCAACTTGGTTCTTTCTTTCCGATAATGGAGAATATTGGATTTGTGCATGAAGTAAAGAGCCTGATTTTGCAACTAGGGTGTATTCCTAACGCCCTTCTATCCGAGGACTATTCAGCTAAACTTTCAAACGAAAGACTTGACGGACGTGCTACTTCCGGTGTGCCTGTGTCTGATTCCACTCCTTCAGTGGTTAATGGCTCCAATCAGCTAAGTTGTTCATTTCATGCTTCAAAGCCTATTGTTCAAAGACAGGATAGAGTTGTGGAGGCTAAAGTAATACCCTCAAACTTTGATTCAAATCTGCAAAAGCATTCTGTTTCATATAACGGGAGATCTGAATTCAACACCTTAGCTGGTTCTGAGCCGTTTGGTCTATCAGGTCGAAGTGATTATAGCCTAAAATATATGGAACAACAAATCTTATCAGCAGTTGGGAGTCGAGACAATGTTAATCCTTGTATTAATGTGTCAAATTCCATAAACATTTCTCAACTAAAAACAGATGGAAGCCATAACGTTGGCCGTGACAGTACTTCATTACTTAGAGGAATACCAGTACACAGTGGGATGAATAGCCTATCGAGGACAAATATGATTACTACTTCAGAATCACTGAATGATAGTTCAAATTTGACTGGTCGATCAGGTGTCATTCACATGCCTCTAGAATGTTCTAATCAGAAGATTCTTCCCGAAGTTTCAAACTTTGCTTCAAGAGGTCAAAATATAGACTATGACATGCTTCAGGCCTCTAACATCTCCTCTTTTAATCAGGAGGAGCATGTGCCTATTAGTAGTCATATCCCTAGTTTTGTCGATGGTTGCTTTCAGAAAGATGGTACTAATCAATCTATGATGACAACAAATCCTAAACACGAAGAAGCTTGTGCTCAACAATCTCCATCAGGTGGTGACGACCTGTTTGATATTTTAGGTGTGGATTTTAAAAACAAACTTCTCAAAGGACACTGGAATGAACTGTTTGCTGATGAATCAGATGCCAATGCTGCAAATGTGGATAAAAAGGAAATATGTACGAACAAAGAAGGTACAAATTCTGATTATTATTATTCAGTTAACGACTCAATGTTGGACAGTAGCATTTTTTCTGGCATGTCAACAGATCACCTCTTGGATGCTGTGGTCTCAAAGGCCAAACGTCCTTTGATACATAATTCCGATGAGATGTCTTGCAAGACAACATTGACCGGGAATAGTAGTGTCACCTCTATTCCCTCTCGTGTTTGCAAGCAGGCTGTGTCCGGTAATTTTGAAGGGGGTTTGTTTGGTTTTTCGAAGAATGGAGGTAAAACGGGTGCCTTAGAAACTAGTTCTCTAAGGTCTGGTTGTACTAAGGACGATACTGGAAACCTGTCTCAAACGACTACTATATGTGGTTCTCAACTTAGTTCATGGTTGGAGAATGGTGGCAATGTGAAGTATGAAAAGCGTGAAAATAGTGTTTCAACTGGATACTCTAAGCGCCCGGATGAAGCTTGCAAACCTAATCGGAAAAGGCTTAAACCAGGAGAGAATCCTAGGCCTAGACCTAAAGATCGTCAAATGATTCAAGATCGTGTCAAAGAGTTACGAGAGATTGTTCCAAATGGAGCGAAGTGTAGCATAGATGCACTGCTGGAACGTACCATTAAGCATATGGCTTTCTTGCAAAGTGTGACAAAGCATGCCGACAAGCTGAAACAGACCGGAGATTCTAAGATCGTTAGTAACGAAGGTGGGCTGCTTTTGAAAGACAACTTTGTCGGAGGGGCTACATGGGCATATGAGGTTGGCTCCCAATCAATGGTTTGTCCGATTAGAGTCGAAGATTTGAATCCTCCTCGTCAGATGCTAGTCGAGATGCTTTGCGAGGAACGAGGTTTCTTTCTAGAAATAGCTGACTTAATCAGAGGATTAGGCTTAACAATCTTGAAGGGGGTAATGGAAGCTCGCAACGACAAAATCTGGGCACATTTTGTTGTTGAGGCAAATAGGGACGTAACGAGAATGGAAATATTTATGTCACTCGTTCGTCTTCTAGAGCAAACGATGAAGGGTAATGCGTCTTCATCGAATGCAATTGATGACATGATGGGTTACAACACTTTACCACAGAAGGCCTAA 2598 0.4092 MGFLLKEVLKTLCGRNQWSYAVFWKIGCNNSKLLIWEECYYEPLSCPSPHGIVGMSNLSNPNGEGSWFSSESQSSRLGIQEEDRVSSLINKMTANNLVIVAGEGIIGRAAFTNSHEWILLNNFAKGAYPPEVYAEMHHQFLAGMQTVAVIPVLPHGVIQLGSFFPIMENIGFVHEVKSLILQLGCIPNALLSEDYSAKLSNERLDGRATSGVPVSDSTPSVVNGSNQLSCSFHASKPIVQRQDRVVEAKVIPSNFDSNLQKHSVSYNGRSEFNTLAGSEPFGLSGRSDYSLKYMEQQILSAVGSRDNVNPCINVSNSINISQLKTDGSHNVGRDSTSLLRGIPVHSGMNSLSRTNMITTSESLNDSSNLTGRSGVIHMPLECSNQKILPEVSNFASRGQNIDYDMLQASNISSFNQEEHVPISSHIPSFVDGCFQKDGTNQSMMTTNPKHEEACAQQSPSGGDDLFDILGVDFKNKLLKGHWNELFADESDANAANVDKKEICTNKEGTNSDYYYSVNDSMLDSSIFSGMSTDHLLDAVVSKAKRPLIHNSDEMSCKTTLTGNSSVTSIPSRVCKQAVSGNFEGGLFGFSKNGGKTGALETSSLRSGCTKDDTGNLSQTTTICGSQLSSWLENGGNVKYEKRENSVSTGYSKRPDEACKPNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLERTIKHMAFLQSVTKHADKLKQTGDSKIVSNEGGLLLKDNFVGGATWAYEVGSQSMVCPIRVEDLNPPRQMLVEMLCEERGFFLEIADLIRGLGLTILKGVMEARNDKIWAHFVVEANRDVTRMEIFMSLVRLLEQTMKGNASSSNAIDDMMGYNTLPQKA 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03641 865 MobiDBLite consensus disorder prediction 645 679 - -
Trre12g03641 865 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 179 IPR025610 -
Trre12g03641 865 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 859 IPR043561 GO:0003700|GO:0006355
Trre12g03641 865 MobiDBLite consensus disorder prediction 641 679 - -
Trre12g03641 865 CDD bHLH_AtLHW_like 669 738 - -
Trre12g03641 865 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 665 714 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03641 Trre-Chr12 52236876 52241646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03641 461 862 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 52.826 3.71e-113 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03641 - - cam:101492357 1159.82