Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03632 ATGGGAGTTATATTGATAGAACAAGTTTCAAAATTGATACTTTTTTGTTCAATGATTAACATATGTTATAGTGCTACAAACCCTAATGATCTCAAAGTTTTGAATGATTTTAGAAAAGGGTTAGAAAATTCTGAGCTTTTGAAATGGCCAGAAAAAGGTAACAATGATCCATGTGGTCCTCCATCATGGCCTTACGTGTTTTGTTCTGATGATAGAGTCACTCAGATTCAAGCTAAGAATCTTGGTCTTAAAGGAAAATTGCCACAAAATTTTAACCAACTCTCAGAACTCAACAATTTAGGCCTTCAACGAAACAATCTTACCGGAATGTTACCTAGTTTTCATGGTTTGTCGAAATTGGAATTCGCTTTCTTGGATTACAATTCATTTGATGCTATCCCTTTTGATTTCTTCAATGGATTAACAAGCCTTAGAGTTTTGTCTTTGGAAGAAAATCAACTCAATGTTAGTACTAATGGTTGGTCATTTCCTTCGGATTTGGAGAAATCGGCTCAGTTAACTGATCTTTCATTTGTTCATTGTAATTTGGTTGGATCTTTGCCTGATTTTCTAGGCACATTGCCATCTCTCACAAGTCTAAGGCTTTCGAACAACAAACTTTCCGGTACCATTCCGGCTACTTTTGCTCAATCTTCAATTCAGGTTTTGTGGTTGAATAATCAAGAAGAAGGTGGTTTTACAGGTTCGATCGATGTTATTGCTTCGATGGTTTTCTTAACAACAATTTGGCTACATGGAAACAAATTCTCAGGTACAATTCCAAACAATATTGGAAATCTCACTTCCTTGAAAGAACTCAATCTCAATAGTAATCAAATTGTTGGGTTGATTCCAAAATCCTTAGCAGAAATGGACCTTGATTCGCTTGTTTTGAACAATAACATGCTAATGGGTCCAATACCGAAGTTTAAAGCCGCAAACTTTTCTTATGATGATAATCTCTTTTGTCAAACTGAGCCAGGACTTGAATGTTCTTCAGAAGTTACAGCACTGCTTGATTTTCTGAACAATCTGAATTATCCGTCTTTTCTGATTTCTGATTGGTCAGGTAATAAACCATGTACAAGTAGCACAGGACCATGGTTTGGATTAAGCTGCAACAATTCAAACACTGGTGTATCTATAATTAATCTACCAAAACATAAGCTTAATGGTAGTTTAAGTCCTTCACTTGCTAAGTTAGATTCACTTCTTGAAATTAGGCTTGCTGGAAATAATATAACCGGCGCAGTTCCTAGCGATTTTACTAAATTGAAATCGTTGAGGTTGTTGGATTTAACTGATAATAATATCGATTCTCCTTTGCCGAATTTTCATGATGGTGTGAAAGTTATTACTGTTGGTAACCCCTTTCTAATTAATAATCGAACTGGAGGGAGTGTTAGTCCTACTATTAGTGGCCCGAGTTCGGAAAAAACCCCTTCGCATTCTCCATCTTCACTGAACCAGCCGGTTCCGAGCTCAAATCATAAAAGATTCAAGACAGTGGCAACAGTGGCTGGAATTGCAGGGTTTGCAGTTGTAGCTTTTTTGGTTGTTTATCTCTTTTTATGTTTCTTTAAGAACAAGAAAACATCGTCGAATGCTCCAAGTTCCATCGTGGTTCACCCTCGAGATCTGTCTGATCGAGGCAATGTAGTTAAAATTGCGGTTTCAAGCAACAACACTGGAAGCTTATCAGGAAAAACTAGGACAAGTTCTCTGAGTAACTTAAGTGGCGAAACTCAAAACTCTTATTCTATTGAGGCTGGTAAGAATGTCATATCGGTGCAAGTGCTACGCAAGGTTACTAACGATTTCGCATCAGAAAATGAGCTAGGACGCGGTGGATTTGGGACTGTTTACAAAGGGGAATTAGAAGATGGAACCAATATAGCAGTAAAGAGAATGGAGAATGGAGTTATTGGCAATAAGGCATTGGATGAGTTTCAATCAGAAATAGATGTTCTTTCTAAGGTTCGTCACCGACATTTGGTATCTCTTTTAGGGTATTCCATTGAAGGCAATGAGAGACTTTTAGTTTATGAATATATGCCACTTGGTGCTCTAAGTCAACATCTTTTTCATTGGAGAAAATTCGAGTTGAAGCCTTTATCTTGGTCACAAAGGCTTGTAATAGCACTAGATGTTGCTAGAGCGATGGAATATCTTCACGGTCTTGCTCGCGAGACCTTTATTCATAGAGATCTCAAGTCTTCTAATATTCTACTCGGCAATGATTTTCGTGCAAAAGTTTCGGATTTTGGTCTTGTGAAGCTTGCCCCGAATGGTGAAAAATCTATCGTAACCAAACTTGCCGGGACATTTGGTTACCTAGCCCCTGAATATGCCGTGATGGGGAAAATCACTACAAAAGTTGACGTATTCAGCTACGGCGTGGTATTAATGGAACTTCTAACCGGACTAACGGCGCTTGACGAGAGTCGGTCAGAGGAAATCCGATACCTGGCCGAATGGTTTTGGCGAATTAAATCAAACAAAGAAAAGCTTATGTCTGCCATTGATCCAGCTTTAGAACCAAATGAAGAAACATATGAAAGTATAACTATTGTAGCAGAACTTGCTGGACATTGCACTGCTAGGGAAGCATACCATAGGCCAGATATGAGTCATGCTGTCAATGTACTAGGAGCATTAGTGGAGAAATGGCGACCGGTTGATGATGAACTCGATTGCTATTCCGCAATTGACGGCACTCGACCACTTCCTCAATTGTTGAAAATTTGGAAGGATGCAGAAAGCAAAGAGTTTAGCTATAGTTCTACTGCTAGTCTTGAAGACAGTAAAGGAAGTATTGCATTGAGGCCTGCTGGATTTGCTGATTCTTTCACTTCTAATGATGCTAGATGA 2871 0.3859 MGVILIEQVSKLILFCSMINICYSATNPNDLKVLNDFRKGLENSELLKWPEKGNNDPCGPPSWPYVFCSDDRVTQIQAKNLGLKGKLPQNFNQLSELNNLGLQRNNLTGMLPSFHGLSKLEFAFLDYNSFDAIPFDFFNGLTSLRVLSLEENQLNVSTNGWSFPSDLEKSAQLTDLSFVHCNLVGSLPDFLGTLPSLTSLRLSNNKLSGTIPATFAQSSIQVLWLNNQEEGGFTGSIDVIASMVFLTTIWLHGNKFSGTIPNNIGNLTSLKELNLNSNQIVGLIPKSLAEMDLDSLVLNNNMLMGPIPKFKAANFSYDDNLFCQTEPGLECSSEVTALLDFLNNLNYPSFLISDWSGNKPCTSSTGPWFGLSCNNSNTGVSIINLPKHKLNGSLSPSLAKLDSLLEIRLAGNNITGAVPSDFTKLKSLRLLDLTDNNIDSPLPNFHDGVKVITVGNPFLINNRTGGSVSPTISGPSSEKTPSHSPSSLNQPVPSSNHKRFKTVATVAGIAGFAVVAFLVVYLFLCFFKNKKTSSNAPSSIVVHPRDLSDRGNVVKIAVSSNNTGSLSGKTRTSSLSNLSGETQNSYSIEAGKNVISVQVLRKVTNDFASENELGRGGFGTVYKGELEDGTNIAVKRMENGVIGNKALDEFQSEIDVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPLGALSQHLFHWRKFELKPLSWSQRLVIALDVARAMEYLHGLARETFIHRDLKSSNILLGNDFRAKVSDFGLVKLAPNGEKSIVTKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLTALDESRSEEIRYLAEWFWRIKSNKEKLMSAIDPALEPNEETYESITIVAELAGHCTAREAYHRPDMSHAVNVLGALVEKWRPVDDELDCYSAIDGTRPLPQLLKIWKDAESKEFSYSSTASLEDSKGSIALRPAGFADSFTSNDAR 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03632 956 SMART LRR_typ_2 94 116 IPR003591 -
Trre12g03632 956 SMART LRR_typ_2 267 290 IPR003591 -
Trre12g03632 956 SMART LRR_typ_2 401 424 IPR003591 -
Trre12g03632 956 SMART LRR_typ_2 117 140 IPR003591 -
Trre12g03632 956 SMART LRR_typ_2 194 217 IPR003591 -
Trre12g03632 956 SMART LRR_typ_2 425 447 IPR003591 -
Trre12g03632 956 SMART LRR_typ_2 141 164 IPR003591 -
Trre12g03632 956 Gene3D Transferase(Phosphotransferase) domain 1 685 899 - -
Trre12g03632 956 FunFam receptor protein kinase TMK1 685 902 - -
Trre12g03632 956 Pfam Protein kinase domain 609 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03632 956 SUPERFAMILY L domain-like 332 445 - -
Trre12g03632 956 FunFam Receptor-like kinase TMK4 28 328 - -
Trre12g03632 956 ProSiteProfiles Protein kinase domain profile. 607 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03632 956 MobiDBLite consensus disorder prediction 465 495 - -
Trre12g03632 956 ProSitePatterns Serine/Threonine protein kinases active-site signature. 732 744 IPR008271 GO:0004672|GO:0006468
Trre12g03632 956 Pfam Leucine rich repeat N-terminal domain 333 374 IPR013210 -
Trre12g03632 956 Pfam Leucine rich repeat N-terminal domain 28 69 IPR013210 -
Trre12g03632 956 Gene3D Ribonuclease Inhibitor 28 328 IPR032675 -
Trre12g03632 956 PANTHER OSJNBA0070M12.3 PROTEIN 13 956 - -
Trre12g03632 956 SUPERFAMILY L domain-like 26 310 - -
Trre12g03632 956 SMART serkin_6 607 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03632 956 CDD STKc_IRAK 613 883 - -
Trre12g03632 956 Gene3D Phosphorylase Kinase; domain 1 568 684 - -
Trre12g03632 956 ProSitePatterns Protein kinases ATP-binding region signature. 613 635 IPR017441 GO:0005524
Trre12g03632 956 Gene3D Ribonuclease Inhibitor 333 495 IPR032675 -
Trre12g03632 956 FunFam receptor protein kinase TMK1 569 684 - -
Trre12g03632 956 SUPERFAMILY Protein kinase-like (PK-like) 585 883 IPR011009 -
Trre12g03632 956 FunFam Leucine-rich repeat receptor-like kinase 333 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03632 Trre-Chr12 52150692 52154164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03632 85 876 Receptor kinase-like Gene Family AT1G55610 29.453 2.64e-77 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trre12g03632 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03632 - - cam:101493565 1587.01