Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03625 ATGGTGTCTAAGATGGATCAATACGAGATCATGGAACAGATCGGTCGTGGTGCATTTGGTGCTGCGATTCTCGTTAATCACAAAGTGGAGAAGAAGAGATATGTGTTGAAGAAAATTAGGCTTGCGCGGCAAACGGAACGGTGTAGAAGATCTGCACATCAAGAGATGGCTCTTATTGCTCGAATTAAGCACCCTTACATTGTTGAATTCAAGGAAGCTTGGGTTGAGAAGGGTTGCTATGTCTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGGAAGCATTGATCAAAAAATCAAATGGGGTTTACTTTCCTGAGGAAAAAATCTGCAAATGGGTTACTCAATTACTGTTGGCAGTAGAATACCTGCATTCAAATTTTGTTTTACACCGTGACCTAAAGTGTTCTAACATCTTTCTTACAAAGGATCAGGATGTTCGCTTGGGGGATTTTGGACTTGCTAAAACACTAAAAGCAGATGATTTGACTTCTTCGGTTGTAGGAACTCCCAACTACATGTGTCCTGAACTGCTTACAGATATTCCTTATGGATTAAAATCTGATATTTGGTCGCTAGGGTGTTGTATATATGAGATGGCTGCTCACCGACCTGCTTTCAAAGCTTTTGATATGGATGGATTGATAAGCAAGATAAACCGCTCCGCTATTGGTGCTTTGCCTCCCTGTTACTCTCCATCCTTGAAAACACTGATAAAAGGCATGCTGAGGAAAAACCCCGAGCATCGTCCATCAGCATCCGATATCTTAAAGCACCCTTGTTTGCAGACTCACGTTCATCAATATCGTTCATCTCTCTGTCCTCCATCAGCCTCTTCTCCTGAAAAGCCAATTTCTGCTGTCCATGTTCCTCGGAAAAATATGGCCGAAAGGGAAAACAGTAATAGTTGGAGTAGTGACAAAGGTAGTTTGATGTCAAATGAGAGAAACGCTGCAAAAGCAGCATTAAAGGGTGATAAAAAAATCACTGAGGTAGATCTGGCATCAATTGACAATAATGGGTCTGACCTCATGCCAGGTGGAAAAGGAATTAACTCCAGCAATGTCAATGCCAAAACAGATAAACAGGAGATTAGGAAGCAAACTCACATTGAGCACCCTTCTAATGTTGGATATAAGCAAAGGAAAGCAGTTAAGAATGTAATGATAGCACCAAAACATGAAAAGGTTAGAGAGACAAGTGCTCCAATGAGAGGCAGTTTGATGAAGGCTGGTGGTATGTCAATACAGAAAATAAATACAGAGACATTGTCTAAATTGCCGAAACCTGATTTTGGTGTTACTGGATTGAAGCCTAATTTAGAGGTGCCGCCTATTGGACCTTCAAAAGCAACACTTAATTGTGTAAAACAAATCCAAGGATCACATACTACAAAACATCAGTTACAGATGATAGAGTCTACACCAAAAACTAAACCTCGGCATAAGGTGTCACCTTCTTGTCCTATCAAACAAGTAGTAGCAGAAGCTGTAGTTCCTGCCAAGCCAAAACAAAAGACTCTTCCGAGCCTACTTAAACCACCCTCATTTCCGGGACATATAAGGCAGGCCGGGCATGATATGCCAAATGCAGAAAATGATACAATACAGATAAGTCCAAATAAAATATCTCAGGATCTAAAGATGGGCCATCATCAGTTGAATAGCGGTCATCTAGCACATGTTTCTAGAGAGCCTTCGAAGGCTTTTGAAAGTGGTACCAAAAGAATGCAAACAGACAACAGTCATTCTGTCTCATCTTCCGCCTCTATTCAAGGATTCGAATTTTATGACTCTGCAACCACTTTTATTGACTTGAGTGAACCAACACTCCCTGAACATGGGAGTTTTAATCACACTGAAAAGGTGGAATCATTTCCAGATAGCAGCGGACCTGATGAAAGTTTTTCTGGTGAAACCTCTCCATTTACACCAAATTTTCAGAATACCATTACTAGTAATGAGAAATTAAGTCCCAGTTTAGCTCTGGATCACTCAGTTCAACATCCTAAGGTAATGTATGCTTCTGGTGACAGCTTTTTCGTAAATAAAACAACTACATCTGCTCCCTGTGAGTGTGATGTTCCCTCTTCCGAAGTGACACAAGAAATCAATGACCTTCAAGATATTTCTAAGGAAATGGCTTCAATTAAAACTTTCAGACATTCATTCCCTATTTCTGGAGAAAATTCTGTTTGTGATGTTAGTCCAGTAAGCTTGCCAAATAGTATGCCTGGTAAAGTTAGCCAGTCAAAGTTTACGTGCATCTCGACCGGTGATGACAAATTCATGGTGAGGGAAAGAGTCTCATCAGTGGCTGAAACTGCTCCTCTGAATATCTCTACTAAAATTTCAAGCCAGAAAGTTTTACAAGACGAGAAGAGAATGATTTTACAGAATCCAGCAACAGAAAAGCCAGCTTCTGGCCATCTTCCCCCAGCTTTTGATGATGTCATCCATGTAATACGCCATAGCAGTTATCGTATGGGAAGTGAGCTTCCAGTAAAGGACTCAACTGAGATTGGAGTTACACATGTAGATGTTGGTAAACTTATCAACACTGTAAAGGATGATTTAGAAATGAGAAACGCGGGAACTCCTTTCTCCCTTAAATCTTCAAATTGCTCTGAAGTTACTAGCTTGAACTCAAATACTGCTGATAGTATGGAAATCAGAAACTTGAGCTTGAATTCATATTTTCCTAACTATCCTGGTGTTGAGGAACATTATGTGAAAAAACCTGATTCTCTAGTTTCAAAACCTGACTCTGCTAAATATACCAAATATAGCCCTCCTACAGCCGAAGAGGTAATGCCAGAAAAGGAATCATTGGATGTTCAATCTTCCAAGCAGAGAGCTGATGCACTTGAAGGGCTGTTAGAATTGTCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTAGCAGTTGTTTTGAAGCCCTTTGGAAAAGATAAGGTCTCCTCAAGGGAGACAGCCATGAGGTTTCTTTATCTTGTGCCGTTGTGCTACTGTAAATAA 3021 0.4052 MVSKMDQYEIMEQIGRGAFGAAILVNHKVEKKRYVLKKIRLARQTERCRRSAHQEMALIARIKHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMEALIKKSNGVYFPEEKICKWVTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLTSSVVGTPNYMCPELLTDIPYGLKSDIWSLGCCIYEMAAHRPAFKAFDMDGLISKINRSAIGALPPCYSPSLKTLIKGMLRKNPEHRPSASDILKHPCLQTHVHQYRSSLCPPSASSPEKPISAVHVPRKNMAERENSNSWSSDKGSLMSNERNAAKAALKGDKKITEVDLASIDNNGSDLMPGGKGINSSNVNAKTDKQEIRKQTHIEHPSNVGYKQRKAVKNVMIAPKHEKVRETSAPMRGSLMKAGGMSIQKINTETLSKLPKPDFGVTGLKPNLEVPPIGPSKATLNCVKQIQGSHTTKHQLQMIESTPKTKPRHKVSPSCPIKQVVAEAVVPAKPKQKTLPSLLKPPSFPGHIRQAGHDMPNAENDTIQISPNKISQDLKMGHHQLNSGHLAHVSREPSKAFESGTKRMQTDNSHSVSSSASIQGFEFYDSATTFIDLSEPTLPEHGSFNHTEKVESFPDSSGPDESFSGETSPFTPNFQNTITSNEKLSPSLALDHSVQHPKVMYASGDSFFVNKTTTSAPCECDVPSSEVTQEINDLQDISKEMASIKTFRHSFPISGENSVCDVSPVSLPNSMPGKVSQSKFTCISTGDDKFMVRERVSSVAETAPLNISTKISSQKVLQDEKRMILQNPATEKPASGHLPPAFDDVIHVIRHSSYRMGSELPVKDSTEIGVTHVDVGKLINTVKDDLEMRNAGTPFSLKSSNCSEVTSLNSNTADSMEIRNLSLNSYFPNYPGVEEHYVKKPDSLVSKPDSAKYTKYSPPTAEEVMPEKESLDVQSSKQRADALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSSRETAMRFLYLVPLCYCK 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03625 1006 SUPERFAMILY Protein kinase-like (PK-like) 5 306 IPR011009 -
Trre12g03625 1006 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03625 1006 MobiDBLite consensus disorder prediction 921 945 - -
Trre12g03625 1006 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Trre12g03625 1006 CDD STKc_Nek 7 262 - -
Trre12g03625 1006 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Trre12g03625 1006 MobiDBLite consensus disorder prediction 622 640 - -
Trre12g03625 1006 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 961 - -
Trre12g03625 1006 MobiDBLite consensus disorder prediction 611 640 - -
Trre12g03625 1006 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03625 1006 Pfam Protein kinase domain 8 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03625 1006 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Trre12g03625 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Trre12g03625 1006 Gene3D Transferase(Phosphotransferase) domain 1 90 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03625 Trre-Chr12 52026065 52032686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03625 14 273 MAP Kinase Kinase Kinase AT1G53570 30.943 6.60e-34 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Trre12g03625 Pkinase 8.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03625 K08857 - gmx:100818943 1324.3