LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g03623	ATGGTGTCTAAGATGGATCAATACGAGATCATGGAACAGATCGGTCGTGGTGCATTTGGTGCTGCGATTCTCGTTAATCACAAAGTGGAGAAGAAGAGATATGTGTTGAAGAAAATTAGGCTTGCGCGGCAAACGGAACGGTGTAGAAGATCTGCACATCAAGAGATGGCTCTTATTGCTCGAATTAAGCACCCTTACATTGTTGAATTCAAGGAAGCTTGGGTTGAGAAGGGTTGCTATGTCTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGGAAGCATTGATCAAAAAATCAAATGGGGTTTACTTTCCTGAGGAAAAAATCTGCAAATGGGTTACTCAATTACTGTTGGCAGTAGAATACCTGCATTCAAATTTTGTTTTACACCGTGACCTAAAGTGTTCTAACATCTTTCTTACAAAGGATCAGGATGTTCGCTTGGGGGATTTTGGACTTGCTAAAACACTAAAAGCAGATGATTTGACTTCTTCGGTTGTAGGAACTCCCAACTACATGTGTCCTGAACTGCTTACAGATATTCCTTATGGATTAAAATCTGATATTTGGTCGCTAGGGTGTTGTATATATGAGATGGCTGCTCACCGACCTGCTTTCAAAGCTTTTGATATGGATGGATTGATAAGCAAGATAAACCGCTCCGCTATTGGTGCTTTGCCTCCCTGTTACTCTCCATCCTTGAAAACACTGATAAAAGGCATGCTGAGGAAAAACCCCGAGCATCGTCCATCAGCATCCGATATCTTAAAGCACCCTTGTTTGCAGACTCACGTTCATCAATATCGTTCATCTCTCTGTCCTCCATCAGCCTCTTCTCCTGAAAAGCCAATTTCTGCTGTCCATGTTCCTCGGAAAAATATGGCCGAAAGGGAAAACAGTAATAGTTGGAGTAGTGACAAAGGTAGTTTGATGTCAAATGAGAGAAACGCTGCAAAAGCAGCATTAAAGGGTGATAAAAAAATCACTGAGGTAGATCTGGCATCAATTGACAATAATGGGTCTGACCTCATGCCAGGTGGAAAAGGAATTAACTCCAGCAATGTCAATGCCAAAACAGATAAACAGGAGATTAGGAAGCAAACTCACATTGAGCACCCTTCTAATGTTGGATATAAGCAAAGGAAAGCAGTTAAGAATGTAATGATAGCACCAAAACATGAAAAGGTTAGAGAGACAAGTGCTCCAATGAGAGGCAGTTTGATGAAGGCTGGTGGTATGTCAATACAGAAAATAAATACAGAGACATTGTCTAAATTGCCGAAACCTGATTTTGGTGTTACTGGATTGAAGCCTAATTTAGAGGTGCCGCCTATTGGACCTTCAAAAGCAACACTTAATTGTGTAAAACAAATCCAAGGATCACATACTACAAAACATCAGATGATAGAGTCTACACCAAAAACTAAACCTCGGCATAAGGTGTCACCTTCTTGTCCTATCAAACAAGTAGTAGCAGAAGCTGTAGTTCCTGCCAAGCCAAAACAAAAGACTCTTCCGAGCCTACTTAAACCACCCTCATTTCCGGGACATATAAGGCAGGCCGGGCATGATATGCCAAATGCAGAAAATGATACAATACAGATAAGTCCAAATAAAATATCTCAGGATCTAAAGATGGGCCATCATCAGTTGAATAGCGGTCATCTAGCACATGTTTCTAGAGAGCCTTCGAAGGCTTTTGAAAGTGGTACCAAAAGAATGCAAACAGACAACAGTCATTCTGTCTCATCTTCCGCCTCTATTCAAGGATTCGAATTTTATGACTCTGCAACCACTTTTATTGACTTGAGTGAACCAACACTCCCTGAACATGGGAGTTTTAATCACACTGAAAAGGTGGAATCATTTCCAGATAGCAGCGGACCTGATGAAAGTTTTTCTGGTGAAACCTCTCCATTTACACCAAATTTTCAGAATACCATTACTAGTAATGAGAAATTAAGTCCCAGTTTAGCTCTGGATCACTCAGTTCAACATCCTAAGGTAATGTATGCTTCTGGTGACAGCTTTTTCGTAAATAAAACAACTACATCTGCTCCCTGTGAGTGTGATGTTCCCTCTTCCGAAGTGACACAAGAAATCAATGACCTTCAAGATATTTCTAAGGAAATGGCTTCAATTAAAACTTTCAGACATTCATTCCCTATTTCTGGAGAAAATTCTGTTTGTGATGTTAGTCCAGTAAGCTTGCCAAATAGTATGCCTGGTAAAGTTAGCCAGTCAAAGTTTACGTGCATCTCGACCGGTGATGACAAATTCATGGTGAGGGAAAGAGTCTCATCAGTGGCTGAAACTGCTCCTCTGAATATCTCTACTAAAATTTCAAGCCAGAAAGTTTTACAAGACGAGAAGAGAATGATTTTACAGAATCCAGCAACAGAAAAGCCAGCTTCTGGCCATCTTCCCCCAGCTTTTGATGATGTCATCCATGTAATACGCCATAGCAGTTATCGTATGGGAAGTGAGCTTCCAGTAAAGGACTCAACTGAGATTGGAGTTACACATGTAGATGTTGGTAAACTTATCAACACTGTAAAGGATGATTTAGAAATGAGAAACGCGGGAACTCCTTTCTCCCTTAAATCTTCAAATTGCTCTGAAGTTACTAGCTTGAACTCAAATACTGCTGATAGTATGGAAATCAGAAACTTGAGCTTGAATTCATATTTTCCTAACTATCCTGGTGTTGAGGAACATTATGTGAAAAAACCTGATTCTCTAGTTTCAAAACCTGACTCTGCTAAATATACCAAATATAGCCCTCCTACAGCCGAAGAGGTAATGCCAGAAAAGGAATCATTGGATGTTCAATCTTCCAAGCAGAGAGCTGATGCACTTGAAGGGCTGTTAGAATTGTCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTAGCAGTTGTTTTGAAGCCCTTTGGAAAAGATAAGGTCTCCTCAAGGGAGACAGCCATGAGGTTTCTTTATCTTGAAGTACTAAAAGCTCTGGCCCAAAATTTTCTTTTGGCAACTAGCTATAGCATAACTCCTAGCACACACCCTACTTCCAAATTCTATATGGAGTCTCAGTCTCCTCATACCGGAACAGGCATTAATGCTGCTTCCGGGACACCGAAATCGTCTACTTTCGGTTTAGTACGCCGACTTACCTGGACATTTGTTTTACTCTTTCTTTTGTTAACTGTCATCATTGCTATAGCTTGGAGTGTCATGGACCCGCATAAACCTCGTTTTCGAGTCAGCTCAATCTCTGTGTCCAACTTCTCTGTCTCTGATTCGGAGCTCAAAGGTACATTTGAGATTGAACTAAACATAACAAACCCAAACAGAAAGGTAGAAATTATGGTTGACAGTTTCTCCGTCTCGGTGTTTTATGGATCCGTGAGGCTCTTCGGAGCTATTGTGCCGCAACCCATCTACTTGAAGAAGTCAAGTAACAAAGATGTGAAGATTAAGTTTATCTTAAGGGATTCTTCCATCAAATTAGCTCATAATGATTTGGTTAATGATTGGAATAAAGGGATAGTAAACTTTGACGTGAAAATGTTGGCTAGGATTGTATATGAAGCTGGAATTTGGCCAAGTAGGGAAAAGTTCTTGGATATTTATTGTGGTAATCTTGATGTTGGATTTGTTCCAATAAAGGACAAAGGCAAGCTCCTAGGTATTGGGAAGGAGTGCCAAACTGAAAGTTAG	3717	0.4049	MVSKMDQYEIMEQIGRGAFGAAILVNHKVEKKRYVLKKIRLARQTERCRRSAHQEMALIARIKHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMEALIKKSNGVYFPEEKICKWVTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLTSSVVGTPNYMCPELLTDIPYGLKSDIWSLGCCIYEMAAHRPAFKAFDMDGLISKINRSAIGALPPCYSPSLKTLIKGMLRKNPEHRPSASDILKHPCLQTHVHQYRSSLCPPSASSPEKPISAVHVPRKNMAERENSNSWSSDKGSLMSNERNAAKAALKGDKKITEVDLASIDNNGSDLMPGGKGINSSNVNAKTDKQEIRKQTHIEHPSNVGYKQRKAVKNVMIAPKHEKVRETSAPMRGSLMKAGGMSIQKINTETLSKLPKPDFGVTGLKPNLEVPPIGPSKATLNCVKQIQGSHTTKHQMIESTPKTKPRHKVSPSCPIKQVVAEAVVPAKPKQKTLPSLLKPPSFPGHIRQAGHDMPNAENDTIQISPNKISQDLKMGHHQLNSGHLAHVSREPSKAFESGTKRMQTDNSHSVSSSASIQGFEFYDSATTFIDLSEPTLPEHGSFNHTEKVESFPDSSGPDESFSGETSPFTPNFQNTITSNEKLSPSLALDHSVQHPKVMYASGDSFFVNKTTTSAPCECDVPSSEVTQEINDLQDISKEMASIKTFRHSFPISGENSVCDVSPVSLPNSMPGKVSQSKFTCISTGDDKFMVRERVSSVAETAPLNISTKISSQKVLQDEKRMILQNPATEKPASGHLPPAFDDVIHVIRHSSYRMGSELPVKDSTEIGVTHVDVGKLINTVKDDLEMRNAGTPFSLKSSNCSEVTSLNSNTADSMEIRNLSLNSYFPNYPGVEEHYVKKPDSLVSKPDSAKYTKYSPPTAEEVMPEKESLDVQSSKQRADALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSSRETAMRFLYLEVLKALAQNFLLATSYSITPSTHPTSKFYMESQSPHTGTGINAASGTPKSSTFGLVRRLTWTFVLLFLLLTVIIAIAWSVMDPHKPRFRVSSISVSNFSVSDSELKGTFEIELNITNPNRKVEIMVDSFSVSVFYGSVRLFGAIVPQPIYLKKSSNKDVKIKFILRDSSIKLAHNDLVNDWNKGIVNFDVKMLARIVYEAGIWPSREKFLDIYCGNLDVGFVPIKDKGKLLGIGKECQTES	1238

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g03623	1238	MobiDBLite	consensus disorder prediction	919	944	-	-
	Trre12g03623	1238	ProSiteProfiles	Protein kinase domain profile.	8	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre12g03623	1238	MobiDBLite	consensus disorder prediction	620	638	-	-
	Trre12g03623	1238	Gene3D	Phosphorylase Kinase; domain 1	1	87	-	-
	Trre12g03623	1238	Gene3D	-	1065	1199	-	-
	Trre12g03623	1238	SUPERFAMILY	LEA14-like	1064	1180	-	-
	Trre12g03623	1238	FunFam	Serine/threonine-protein kinase Nek2	5	87	-	-
	Trre12g03623	1238	CDD	STKc_Nek	7	262	-	-
	Trre12g03623	1238	Pfam	Late embryogenesis abundant protein	1110	1197	IPR004864	-
	Trre12g03623	1238	Pfam	Protein kinase domain	8	261	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre12g03623	1238	SUPERFAMILY	Protein kinase-like (PK-like)	5	306	IPR011009	-
	Trre12g03623	1238	SMART	serkin_6	8	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre12g03623	1238	MobiDBLite	consensus disorder prediction	609	638	-	-
	Trre12g03623	1238	ProSitePatterns	Protein kinases ATP-binding region signature.	14	37	IPR017441	GO:0005524
	Trre12g03623	1238	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	129	141	IPR008271	GO:0004672\|GO:0006468
	Trre12g03623	1238	Gene3D	Transferase(Phosphotransferase) domain 1	90	334	-	-
	Trre12g03623	1238	MobiDBLite	consensus disorder prediction	462	483	-	-
	Trre12g03623	1238	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	5	959	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g03623	Trre-Chr12	52023955	52032686	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g03623	14	273	MAP Kinase Kinase Kinase	AT1G53570	30.943	1.52e-33	135

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Trre12g03623		Pkinase	1.3e-63	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g03623	K08857		-	gmx:100818943	1318.14