Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03607 ATGGAAATGGTTTCTAAGGAAGCTCAGATGTCTATTGCTGCTTCTTCTATGTTTCCTGGTTTCAGATTTTGTCCCACTGATGAAGAGTTGATTTCTTATTACCTTAGAAAAAAATTAGATGGTCATGAAGAAAGTGTTCAGGTTATTTCTGAGGTTGAACTTTGTAAATATGAACCTTGGGATTTACCAGCCAAATCATTCATTCAATCAGATAACGAGTGGTTCTTCTTCTCACCCCGTGGAAGGAAGTATCCAAACGGTTCGCAAAGTAAAAGAGCTACTGATTATGGTTATTGGAAAGCAACTGGAAAAGAGCGCAATGTGAAATCAGGTTCTAACGTCATAGGTACGAAACGGACTTTGGTGTTTCACTTAGGTCGTGCACCTAAAGGCGAAAGGACAGAATGGATTATGCATGAGTACTGCGTCAGTGACAGGTCTCCGGATTCTTTGGTAGTTTGTCGCCTCAAGAGAAACACAGAGTTTCGTGTGAACGATGCTTCCAATAGAGCCTCTTCAAGCCAAGTTAACCCGGTGCATTCACATGAAAGTAATTGTGCTGTCTCAGAAGGTGGTATTGATGATCAAAGACACATTTGTGATCATGAACAAGAAAAGGAGGTTGATGGTAGTTCCAAGCGTGGCAGCAGCAGTTACGGTTCACCTTCAATGGAACAAATTGATTCTGTGTCTGAATCAAATCTGCGACCAGCTAATGACGCTACTTTGACAGACTCTTCCGGCCACCTAAAGATGGATGAAGAGGATTGTTATGCTGAGATACTAAAGAATGATATCATAAAATTAGACGAATCATCAATGTCTCGAGGGGCTCAAACAAGACCACATGACCTTGCACATTCTCATCCCTGCCAAGGCACTGCACAACGGAGAATACGATTAAGGGTTGCGAAATCAACACATTCTCAATCAGGAGTTCGTTTCTCAAGAACAATGCACCAATCAAAGAGTAGCTTCTTTGCTAGAATGACCAGCCGTTTGATGATATTTTCTTTCTTTGTTTTCACTCTCATGGCTATATTTTTTTGGTCTTCATTGGGTGATCACAAACAATTGAGAAACACTGTGGGAAAGTTTCGGGCGTAA 1107 0.4119 MEMVSKEAQMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCKYEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATDYGYWKATGKERNVKSGSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCVSDRSPDSLVVCRLKRNTEFRVNDASNRASSSQVNPVHSHESNCAVSEGGIDDQRHICDHEQEKEVDGSSKRGSSSYGSPSMEQIDSVSESNLRPANDATLTDSSGHLKMDEEDCYAEILKNDIIKLDESSMSRGAQTRPHDLAHSHPCQGTAQRRIRLRVAKSTHSQSGVRFSRTMHQSKSSFFARMTSRLMIFSFFVFTLMAIFFWSSLGDHKQLRNTVGKFRA 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03607 368 MobiDBLite consensus disorder prediction 166 191 - -
Trre12g03607 368 Gene3D NAC domain 26 164 IPR036093 GO:0003677|GO:0006355
Trre12g03607 368 ProSiteProfiles NAC domain profile. 17 159 IPR003441 GO:0003677|GO:0006355
Trre12g03607 368 MobiDBLite consensus disorder prediction 203 248 - -
Trre12g03607 368 MobiDBLite consensus disorder prediction 213 246 - -
Trre12g03607 368 Pfam No apical meristem (NAM) protein 19 142 IPR003441 GO:0003677|GO:0006355
Trre12g03607 368 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Trre12g03607 368 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 236 - -
Trre12g03607 368 MobiDBLite consensus disorder prediction 166 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03607 Trre-Chr12 51906335 51909063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03607 4 287 NAC Transcription Factor Family AT2G27300 51.761 9.57e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre12g03607 NAM 9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03607 - - tpra:123896537 703.36