Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03590 ATGGAGGATCCACCACCTGGTTTTCGTTTCTACCCAACAGAAGAGGAGCTAGTTGGATTCTATCTACACAACCAGCTACAAGGACAAATGTATCATCACATAAACAGAGTTATCCCTATCATTGATATTAATGGCAAAGAGCCATGGGATCTTCCAACATTTGCAGGGGAGAAATGTTGTGGAGAGACAGAACAGTGGTTTTTCTTTTCAGCAAGACAAGAGAGAGAGTTGAGAGGAGGAAGACCTAACAGAACAACATCTTGTGGATATTGGAAGGCCACAGGCTCACCAAGCTACGTTTACTCTTCAAAAAACAGAGTGATTGGGTTAAAGAAAACCATGGTGTTTTACAAAGGGAAAGCTCCTTTTGGAAGGAAAACCAAATGGAAAATGCATGAATATAAAGCCATTGAACAACACTCTCACCCTTATAAGTTGCGACACGAATTCAGCTTGTGTCGCGTTTATGTGATATCAGGAAGCTTTCGTTCATTTGATCGAAGACCATTAGAAATGCCAAAAGTCGAGTTACAACTTGATCATACTACTTCAACGTCTCAACAAGTGGTAGCAGAGCTCGATAGATCAAGCTTGTGCGGAATTACCCACTCAGGAGAGGTAGGACGATTCCATGATGATGCTCTTATTGGAGGGTCAAGTGGAACAAATTGGAATAATGAAGCAAATAATGGGGTTGATGAACCTGAAGTACCTCTTTGGGAATGGGACCAACTACATTGGATTTAA 747 0.4137 MEDPPPGFRFYPTEEELVGFYLHNQLQGQMYHHINRVIPIIDINGKEPWDLPTFAGEKCCGETEQWFFFSARQERELRGGRPNRTTSCGYWKATGSPSYVYSSKNRVIGLKKTMVFYKGKAPFGRKTKWKMHEYKAIEQHSHPYKLRHEFSLCRVYVISGSFRSFDRRPLEMPKVELQLDHTTSTSQQVVAELDRSSLCGITHSGEVGRFHDDALIGGSSGTNWNNEANNGVDEPEVPLWEWDQLHWI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03590 248 Gene3D NAC domain 13 161 IPR036093 GO:0003677|GO:0006355
Trre12g03590 248 Pfam No apical meristem (NAM) protein 5 135 IPR003441 GO:0003677|GO:0006355
Trre12g03590 248 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Trre12g03590 248 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 178 - -
Trre12g03590 248 ProSiteProfiles NAC domain profile. 4 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03590 Trre-Chr12 51742109 51743931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03590 7 247 NAC Transcription Factor Family AT5G22380 52.632 1.40e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre12g03590 NAM 3.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03590 - - gmx:100784960 338.576