Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03568 ATGAGTAAGCTTCAAAGTGATGCTGTGAGAGAAGCTATTACATCAATCGTGGGTGCTTGCAAGGAGAAAAACCGTAATTTTGTGGAGACTATTGAACTCCAGATTGGGCTTAAGAACTACGATCCACAAAAGGACAAGCGTTTCAGTGGTTCTGTCAAATTGCCTCACATCCCTCGACCCAAGATGAAAATTTGCATGCTTGGTGATGCCCAGCATGTTGAGGAGGCAGAGAAAATAGGATTGGAATCGATGGATGTTGAAGCTTTGAAGAAGCTAAACAAAAATAAGAAACTGGTAAAGAAATTGGCAAAGAAGTACCATGCGTTTTTAGCTTCTGAAGCTGTTATCAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGAAAGTTCCCTACACTTGTTTCCCACCAAGAATCTCTTGAGGCTAAGGTTAATGAGACCAAGGCTATGGTCAAATTTCAGCTTAAGAAAGTGTTGTGCATGGGAGTAGCTGTTGGCAATGTCAGTATGGATGAAAAACAAATCTTCCAAAATGTGCAACTGAGTGTTAACTTCCTTGTGTCCTTGTTGAAAAAGAACTGGCAAAATGTTAGGTGCTTGTATCTGAAGAGTTCGATGGGCAAATCACACCGTGTCTTTTAA 651 0.4147 MSKLQSDAVREAITSIVGACKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSSMGKSHRVF 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03568 216 SUPERFAMILY Ribosomal protein L1 3 216 IPR023674 -
Trre12g03568 216 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 216 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Trre12g03568 216 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 11 210 - -
Trre12g03568 216 FunFam Ribosomal protein 137 214 - -
Trre12g03568 216 Gene3D - 22 211 - -
Trre12g03568 216 FunFam Ribosomal protein 65 154 - -
Trre12g03568 216 CDD Ribosomal_L1 9 215 IPR028364 -
Trre12g03568 216 FunFam Ribosomal protein L10a 1 119 - -
Trre12g03568 216 ProSitePatterns Ribosomal protein L1 signature. 116 135 IPR023673 -
Trre12g03568 216 Pfam Ribosomal protein L1p/L10e family 22 210 IPR028364 -
Trre12g03568 216 Gene3D - 65 154 IPR016095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03568 Trre-Chr12 51560595 51562413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03568 1 216 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 89.815 6.43e-132 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03568 K02865 - vvi:100266487 377.481