Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03566 ATGTATCATCATCACCAACAACATCAAGGAAAAAATATCCATTCTTCTTCTAGAATGTCAATACCATCTGAGAGACACATGTTCCTTCAAACAGGTAATGGTTCTAGTGATTCAGGACTCGTACTCTCAACCGATGCTAAACCTCGATTAAAATGGACACCTGATCTTCATGCAAGGTTTATAGAAGCAGTTAATCAATTAGGTGGAGCTGACAAGGCTACTCCAAAAACAGTAATGAAACTCATGGGGATTCCAGGACTTACCTTATACCATCTAAAGAGTCATCTTCAGAAGTACAGATTGAGCAAGAATCTGCATGGACAAAGCAACAGTAATGTGACACACAAATTAAACACACATTCAGCTTCAGTAACTGATGAGAGACTTTCTGATCAAACCAATGGAACTCACATCAACAAATTAACCCTTGGACCACAACCTAATAATAATAATAACAAAGATATACACATAAGCGAGGCGCTGCAGATGCAAATTGAGGTTCAGAGAAGACTCAATGAACAACTTGAGGTACAAAGACACTTGCAACTAAGGATAGAGGCACAAGGAAAATACCTTCAATCGGTACTCGAAAAAGCTCAAGAAACACTCGGTAGACAAAATTTAGGAGTAGTAGGACTTGAAGCTGCTAAAGTTCAACTCTCAGAGCTTGTTTCAAAAGTATCCTCACAGTGTCTGAATTCAACATTTTCAGAGATGAAAGAGTTACAAGGTTTTTGTCCTCAACCAAACGACGGCTCGATGGATAGTAGTTGTTTAACATCGTGCGACCGATCATTAAAAGAACAAGAGATTATTCAAAATGGAGGTGGGTTTGGATTAAGACACTTCAACAACAATAATAATCATGTGTTCATGGAAAGAAAAGAAACACAACAAACAACAGAATTAACAGGTTCTGTTCAAAACCTTAGAAACAATGAAGTACTAAAATGGTGTGTTGATGAAGTAAAAAAGAACACTACTAATTTTCTCACACCATTAGGAAAAAATAATGAATTAGAAAGAAATCATGGAAAATTGTCTATGAACATTGGAGTTGAACAAAGAACAGAAGCAATGAAATCAGTAGATGATAGTAATAAGATGCAACAATCTTCTAATTACTTTTCAGCTTCAAGATTGGATTTAAACAGTGGTGGAGATCATAATGAAGGTGCTACAAATTGTAAACAACTTGATTTGAATAGGTTCAGTTGGAACTGA 1224 0.3611 MYHHHQQHQGKNIHSSSRMSIPSERHMFLQTGNGSSDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNSNVTHKLNTHSASVTDERLSDQTNGTHINKLTLGPQPNNNNNKDIHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGVVGLEAAKVQLSELVSKVSSQCLNSTFSEMKELQGFCPQPNDGSMDSSCLTSCDRSLKEQEIIQNGGGFGLRHFNNNNNHVFMERKETQQTTELTGSVQNLRNNEVLKWCVDEVKKNTTNFLTPLGKNNELERNHGKLSMNIGVEQRTEAMKSVDDSNKMQQSSNYFSASRLDLNSGGDHNEGATNCKQLDLNRFSWN 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03566 407 Gene3D - 46 104 - -
Trre12g03566 407 Pfam MYB-CC type transfactor, LHEQLE motif 155 202 IPR025756 -
Trre12g03566 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 104 IPR017930 -
Trre12g03566 407 Pfam Myb-like DNA-binding domain 49 100 IPR001005 -
Trre12g03566 407 NCBIfam myb-like DNA-binding domain, SHAQKYF class 47 102 IPR006447 GO:0003677
Trre12g03566 407 Coils Coil 158 178 - -
Trre12g03566 407 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 353 IPR044848 GO:0003700
Trre12g03566 407 SUPERFAMILY Homeodomain-like 46 102 IPR009057 -
Trre12g03566 407 FunFam Myb family transcription factor 46 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03566 Trre-Chr12 51539522 51541384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03566 79 407 G2-like Transcription Factor Family AT3G04030 48.397 3.28e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre12g03566 Myb_DNA-binding 3.5e-08 CL0123