Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03565 ATGGCAAGTCAAAGAATTGGAGAGCTTGATTTTTCTGAGGCAGGACATTATGGAATTCATCATAGGGTTAACAATCCTTCATCAAGCTTAATGAATGAAGGATCTGGTTTTGATTTTGGGGAGCTAGAAGAAGCAATAGTTCTGCAAGGAATTAAGAGTAGAAATGATGAAACAAAAGCATCTTTTTTCACAGCCAAACCTGCTTCTGCTACACTGAAAATGTTCCCTTCTTGGCCAATGAGATTCCACCAATCCTCAACAGGAGGGAATAAATCAGGAGGGGAAAGCAGTGATTCAGCACTATCAAGCAAAAATGAGAACCCATTTGAATCAGAATCATCACCATTAAGTTGTAAAAAAGCATCTTCTTCATTTTCATCAGAACAAAACAATACTAATAATCAGCAGCTACAGCAACAGAATATGATAACAAATGATGCTATAAGAACAGGCTCTTCATCACAGAATCAATCAGTAGCTAAAGAAAAGAAAAAAGGAGGTGGTTCAACATCAGATAAGCCACTTGATGCAAAGACATTGAGACGTTTGGCACAAAACAGAGAAGCTGCAAGAAAAAGTCGCCTAAGGAAAAAGGCTTATGTGCAACAACTAGAGTCAAGTAGATTAAAGCTTGCACAATTGGAACAAGACCTTCAAAGAGCACGCTCACAGGGTATGTTCATGGATTGGAATGGTGGTGTTGGAGGCAACATAAGTTCTGGTGCAATGTTTGACATGGAATATGCAAGATGGTTAGAAGATGACAACCGTTTGTTAACGGAGTTAAGAAACGGATTACAAGCGGCGTTATCAGATAATGAAATGAGAGTAATGGTGGATGGGTATTTATGTCATTATGATCAAATATTTAGAGTGAAGAGTGTCACTGCTAAATCAGACGTGTTTCATCTTATCAATGGCATGTGGACTTCTCAAGCTGAACGTTGTTTTCTTTGGATTGGTGGTTTTAGACCCTCTGAAATTATTATGATGTTGATCCAACAATTAGAGCCACTAGCTGAACAGCAAATAATGGGAATGTATGGATTAAGGCATTCATCACAACAAGCAGAAGAGGCACTCTCTCAAGGACTTGACCAATTGCAACAATCTCTTGTTGATACCATTGCTGGAGGACCCCTTGTTGATGGTGTTCAACAAATGGTTGTTGCCATGGGTAAACTTTCTAATCTCGAAGGATTTCTTCGCCAGGCTGATAATTTGAGGCAACAAACTCTTCACCAATTATGTCGATTACTCACACTTCGACAAGCAGCACGCTCTTTTCTTGTCATTGGAGAGTACTATGGGCGACTTCGAGCCCTTAGTTCTCTGTGGGCATCAAGACCACGAGAGAACATGATGAGTGATGATAACTCATGCCAAACAACTACAGACATGCAAATGGTTCAACCTTCTCAGAATCATTTCTCCAATTTCTGA 1443 0.3964 MASQRIGELDFSEAGHYGIHHRVNNPSSSLMNEGSGFDFGELEEAIVLQGIKSRNDETKASFFTAKPASATLKMFPSWPMRFHQSSTGGNKSGGESSDSALSSKNENPFESESSPLSCKKASSSFSSEQNNTNNQQLQQQNMITNDAIRTGSSSQNQSVAKEKKKGGGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQDLQRARSQGMFMDWNGGVGGNISSGAMFDMEYARWLEDDNRLLTELRNGLQAALSDNEMRVMVDGYLCHYDQIFRVKSVTAKSDVFHLINGMWTSQAERCFLWIGGFRPSEIIMMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLDQLQQSLVDTIAGGPLVDGVQQMVVAMGKLSNLEGFLRQADNLRQQTLHQLCRLLTLRQAARSFLVIGEYYGRLRALSSLWASRPRENMMSDDNSCQTTTDMQMVQPSQNHFSNF 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03565 480 Coils Coil 197 224 - -
Trre12g03565 480 MobiDBLite consensus disorder prediction 150 164 - -
Trre12g03565 480 Pfam Seed dormancy control 259 332 IPR025422 GO:0006351|GO:0043565
Trre12g03565 480 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 181 196 IPR004827 GO:0003700|GO:0006355
Trre12g03565 480 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 176 220 IPR004827 GO:0003700|GO:0006355
Trre12g03565 480 SUPERFAMILY Leucine zipper domain 178 219 IPR046347 GO:0003700|GO:0006355
Trre12g03565 480 Gene3D - 177 226 - -
Trre12g03565 480 ProSiteProfiles DOG1 domain profile. 241 449 IPR025422 GO:0006351|GO:0043565
Trre12g03565 480 PANTHER TRANSCRIPTION FACTOR TGA9 112 452 - -
Trre12g03565 480 MobiDBLite consensus disorder prediction 150 180 - -
Trre12g03565 480 CDD bZIP_HBP1b-like 178 228 - -
Trre12g03565 480 FunFam BZIP family transcription factor 177 226 - -
Trre12g03565 480 Pfam bZIP transcription factor 177 218 IPR004827 GO:0003700|GO:0006355
Trre12g03565 480 MobiDBLite consensus disorder prediction 457 480 - -
Trre12g03565 480 SMART brlzneu 174 240 IPR004827 GO:0003700|GO:0006355
Trre12g03565 480 MobiDBLite consensus disorder prediction 165 180 - -
Trre12g03565 480 MobiDBLite consensus disorder prediction 81 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03565 Trre-Chr12 51521527 51528042 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03565 139 480 bZIP Transcription Factor Family AT1G08320 68.786 4.33e-178 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre12g03565 DOG1 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03565 K14431 - gmx:100775461 683.33