Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre12g03565 | ATGGCAAGTCAAAGAATTGGAGAGCTTGATTTTTCTGAGGCAGGACATTATGGAATTCATCATAGGGTTAACAATCCTTCATCAAGCTTAATGAATGAAGGATCTGGTTTTGATTTTGGGGAGCTAGAAGAAGCAATAGTTCTGCAAGGAATTAAGAGTAGAAATGATGAAACAAAAGCATCTTTTTTCACAGCCAAACCTGCTTCTGCTACACTGAAAATGTTCCCTTCTTGGCCAATGAGATTCCACCAATCCTCAACAGGAGGGAATAAATCAGGAGGGGAAAGCAGTGATTCAGCACTATCAAGCAAAAATGAGAACCCATTTGAATCAGAATCATCACCATTAAGTTGTAAAAAAGCATCTTCTTCATTTTCATCAGAACAAAACAATACTAATAATCAGCAGCTACAGCAACAGAATATGATAACAAATGATGCTATAAGAACAGGCTCTTCATCACAGAATCAATCAGTAGCTAAAGAAAAGAAAAAAGGAGGTGGTTCAACATCAGATAAGCCACTTGATGCAAAGACATTGAGACGTTTGGCACAAAACAGAGAAGCTGCAAGAAAAAGTCGCCTAAGGAAAAAGGCTTATGTGCAACAACTAGAGTCAAGTAGATTAAAGCTTGCACAATTGGAACAAGACCTTCAAAGAGCACGCTCACAGGGTATGTTCATGGATTGGAATGGTGGTGTTGGAGGCAACATAAGTTCTGGTGCAATGTTTGACATGGAATATGCAAGATGGTTAGAAGATGACAACCGTTTGTTAACGGAGTTAAGAAACGGATTACAAGCGGCGTTATCAGATAATGAAATGAGAGTAATGGTGGATGGGTATTTATGTCATTATGATCAAATATTTAGAGTGAAGAGTGTCACTGCTAAATCAGACGTGTTTCATCTTATCAATGGCATGTGGACTTCTCAAGCTGAACGTTGTTTTCTTTGGATTGGTGGTTTTAGACCCTCTGAAATTATTATGATGTTGATCCAACAATTAGAGCCACTAGCTGAACAGCAAATAATGGGAATGTATGGATTAAGGCATTCATCACAACAAGCAGAAGAGGCACTCTCTCAAGGACTTGACCAATTGCAACAATCTCTTGTTGATACCATTGCTGGAGGACCCCTTGTTGATGGTGTTCAACAAATGGTTGTTGCCATGGGTAAACTTTCTAATCTCGAAGGATTTCTTCGCCAGGCTGATAATTTGAGGCAACAAACTCTTCACCAATTATGTCGATTACTCACACTTCGACAAGCAGCACGCTCTTTTCTTGTCATTGGAGAGTACTATGGGCGACTTCGAGCCCTTAGTTCTCTGTGGGCATCAAGACCACGAGAGAACATGATGAGTGATGATAACTCATGCCAAACAACTACAGACATGCAAATGGTTCAACCTTCTCAGAATCATTTCTCCAATTTCTGA | 1443 | 0.3964 | MASQRIGELDFSEAGHYGIHHRVNNPSSSLMNEGSGFDFGELEEAIVLQGIKSRNDETKASFFTAKPASATLKMFPSWPMRFHQSSTGGNKSGGESSDSALSSKNENPFESESSPLSCKKASSSFSSEQNNTNNQQLQQQNMITNDAIRTGSSSQNQSVAKEKKKGGGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQDLQRARSQGMFMDWNGGVGGNISSGAMFDMEYARWLEDDNRLLTELRNGLQAALSDNEMRVMVDGYLCHYDQIFRVKSVTAKSDVFHLINGMWTSQAERCFLWIGGFRPSEIIMMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLDQLQQSLVDTIAGGPLVDGVQQMVVAMGKLSNLEGFLRQADNLRQQTLHQLCRLLTLRQAARSFLVIGEYYGRLRALSSLWASRPRENMMSDDNSCQTTTDMQMVQPSQNHFSNF | 480 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre12g03565 | 480 | Coils | Coil | 197 | 224 | - | - | |
Trre12g03565 | 480 | MobiDBLite | consensus disorder prediction | 150 | 164 | - | - | |
Trre12g03565 | 480 | Pfam | Seed dormancy control | 259 | 332 | IPR025422 | GO:0006351|GO:0043565 | |
Trre12g03565 | 480 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 181 | 196 | IPR004827 | GO:0003700|GO:0006355 | |
Trre12g03565 | 480 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 176 | 220 | IPR004827 | GO:0003700|GO:0006355 | |
Trre12g03565 | 480 | SUPERFAMILY | Leucine zipper domain | 178 | 219 | IPR046347 | GO:0003700|GO:0006355 | |
Trre12g03565 | 480 | Gene3D | - | 177 | 226 | - | - | |
Trre12g03565 | 480 | ProSiteProfiles | DOG1 domain profile. | 241 | 449 | IPR025422 | GO:0006351|GO:0043565 | |
Trre12g03565 | 480 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 112 | 452 | - | - | |
Trre12g03565 | 480 | MobiDBLite | consensus disorder prediction | 150 | 180 | - | - | |
Trre12g03565 | 480 | CDD | bZIP_HBP1b-like | 178 | 228 | - | - | |
Trre12g03565 | 480 | FunFam | BZIP family transcription factor | 177 | 226 | - | - | |
Trre12g03565 | 480 | Pfam | bZIP transcription factor | 177 | 218 | IPR004827 | GO:0003700|GO:0006355 | |
Trre12g03565 | 480 | MobiDBLite | consensus disorder prediction | 457 | 480 | - | - | |
Trre12g03565 | 480 | SMART | brlzneu | 174 | 240 | IPR004827 | GO:0003700|GO:0006355 | |
Trre12g03565 | 480 | MobiDBLite | consensus disorder prediction | 165 | 180 | - | - | |
Trre12g03565 | 480 | MobiDBLite | consensus disorder prediction | 81 | 135 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre12g03565 | Trre-Chr12 | 51521527 | 51528042 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre12g03565 | 139 | 480 | bZIP Transcription Factor Family | AT1G08320 | 68.786 | 4.33e-178 | 501 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bZIP | Trre12g03565 | DOG1 | 2.1e-27 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre12g03565 | K14431 | - | gmx:100775461 | 683.33 |