Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03564 ATGGCAAGTCAAAGAATTGGAGAGCTTGATTTTTCTGAGGCAGGACATTATGGAATTCATCATAGGGTTAACAATCCTTCATCAAGCTTAATGAATGAAGGATCTGGTTTTGATTTTGGGGAGCTAGAAGAAGCAATAGTTCTGCAAGGAATTAAGAGTAGAAATGATGAAACAAAAGCATCTTTTTTCACAGCCAAACCTGCTTCTGCTACACTGAAAATGTTCCCTTCTTGGCCAATGAGATTCCACCAATCCTCAACAGGAGGGAATAAATCAGGAGGGGAAAGCAGTGATTCAGCACTATCAAGCAAAAATGAGAACCCATTTGAATCAGAATCATCACCATTAAGTTGTAAAAAAGCATCTTCTTCATTTTCATCAGAACAAAACAATACTAATAATCAGCAGCTACAGCAACAGAATATGATAACAAATGATGCTATAAGAACAGGCTCTTCATCACAGAATCAATCAGTAGCTAAAGAAAAGAAAAAAGGAGGTGGTTCAACATCAGATAAGCCACTTGATGCAAAGACATTGAGACGTTTGGCACAAAACAGAGAAGCTGCAAGAAAAAGTCGCCTAAGGAAAAAGGCTTATGTGCAACAACTAGAGTCAAGTAGATTAAAGCTTGCACAATTGGAACAAGACCTTCAAAGAGCACGCTCACAGGGTATGTTCATGGATTGGAATGGTGGTGTTGGAGGCAACATAAGTTCTGGAGGTGCAATGTTTGACATGGAATATGCAAGATGGTTAGAAGATGACAACCGTTTGTTAACGGAGTTAAGAAACGGATTACAAGCGGCGTTATCAGATAATGAAATGAGAGTAATGGTGGATGGGTATTTATGTCATTATGATCAAATATTTAGAGTGAAGAGTGTCACTGCTAAATCAGACGTGTTTCATCTTATCAATGGCATGTGGACTTCTCAAGCTGAACGTTGTTTTCTTTGGATTGGTGGTTTTAGACCCTCTGAAATTATTATGATGTTGATCCAACAATTAGAGCCACTAGCTGAACAGCAAATAATGGGAATGTATGGATTAAGGCATTCATCACAACAAGCAGAAGAGGCACTCTCTCAAGGACTTGACCAATTGCAACAATCTCTTGTTGATACCATTGCTGGAGGACCCCTTGTTGATGGTGTTCAACAAATGGTTGTTGCCATGGGTAAACTTTCTAATCTCGAAGGATTTCTTCGCCAGGCTGATAATTTGAGGCAACAAACTCTTCACCAATTATGTCGATTACTCACACTTCGACAAGCAGCACGCTCTTTTCTTGTCATTGGAGAGTACTATGGGCGACTTCGAGCCCTTAGTTCTCTGTGGGCATCAAGACCACGAGAGAACATGATGAGTGATGATAACTCATGCCAAACAACTACAGACATGCAAATGGTTCAACCTTCTCAGAATCATTTCTCCAATTTCTGA 1446 0.397 MASQRIGELDFSEAGHYGIHHRVNNPSSSLMNEGSGFDFGELEEAIVLQGIKSRNDETKASFFTAKPASATLKMFPSWPMRFHQSSTGGNKSGGESSDSALSSKNENPFESESSPLSCKKASSSFSSEQNNTNNQQLQQQNMITNDAIRTGSSSQNQSVAKEKKKGGGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQDLQRARSQGMFMDWNGGVGGNISSGGAMFDMEYARWLEDDNRLLTELRNGLQAALSDNEMRVMVDGYLCHYDQIFRVKSVTAKSDVFHLINGMWTSQAERCFLWIGGFRPSEIIMMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLDQLQQSLVDTIAGGPLVDGVQQMVVAMGKLSNLEGFLRQADNLRQQTLHQLCRLLTLRQAARSFLVIGEYYGRLRALSSLWASRPRENMMSDDNSCQTTTDMQMVQPSQNHFSNF 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03564 481 Coils Coil 197 224 - -
Trre12g03564 481 MobiDBLite consensus disorder prediction 150 164 - -
Trre12g03564 481 PANTHER TRANSCRIPTION FACTOR TGA9 112 453 - -
Trre12g03564 481 MobiDBLite consensus disorder prediction 458 481 - -
Trre12g03564 481 ProSiteProfiles DOG1 domain profile. 242 450 IPR025422 GO:0006351|GO:0043565
Trre12g03564 481 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 181 196 IPR004827 GO:0003700|GO:0006355
Trre12g03564 481 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 176 220 IPR004827 GO:0003700|GO:0006355
Trre12g03564 481 SUPERFAMILY Leucine zipper domain 178 219 IPR046347 GO:0003700|GO:0006355
Trre12g03564 481 Gene3D - 177 226 - -
Trre12g03564 481 MobiDBLite consensus disorder prediction 150 180 - -
Trre12g03564 481 CDD bZIP_HBP1b-like 178 228 - -
Trre12g03564 481 Pfam Seed dormancy control 260 333 IPR025422 GO:0006351|GO:0043565
Trre12g03564 481 FunFam BZIP family transcription factor 177 226 - -
Trre12g03564 481 SMART brlzneu 174 240 IPR004827 GO:0003700|GO:0006355
Trre12g03564 481 MobiDBLite consensus disorder prediction 165 180 - -
Trre12g03564 481 Pfam bZIP transcription factor 177 218 IPR004827 GO:0003700|GO:0006355
Trre12g03564 481 MobiDBLite consensus disorder prediction 81 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03564 Trre-Chr12 51521527 51528042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03564 139 481 bZIP Transcription Factor Family AT1G08320 68.786 6.48e-180 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre12g03564 DOG1 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03564 K14431 - gmx:100775461 682.945