Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03563 ATGGCTCTACAAGTACAAGATTTGGATCAAGATGTTCAATTGCAAGAACAAGAAGAAGCTACAATTGGTCAACCTAGCAAACAAAACTCAATACTCTCACTTACCCTTGATGAGTTCCAATGCAAAAGTGGTAAGAGTTTTGGTTCCCTCAACATGGATGAGTTCATAGCTAGCATTTGGAACTCCAATGATGAAGCTACTACTATTACTACTCAAACTCAGAAGAATACTAAAAATGTTGCAACAACAGAAGAAAATTCATTTTCTGTCCCTCCTCTAATTTGCAAGAAAACTGTTGATGAAGTTTGGTCTGAGATTCATAAGAACACACCACAATTCAAAGAAGAAAATAACCTTCAAAGAAATGAAACTCTTATGAAGCAACAAACACTTGGAGAATTGACTTTGGAGGATTTTTTAGTAAAAGCTGGTGTTGTACAACAATCATCATCATTTCCATATCAGAATCATAGTGGCAATGTTTTAAGGAATGCGACACCGATGAATAATGTTGCAAGTTATGGTTTGAGTCCTTCAATGGGAATGGGATATTCTAATCAATGTGTGTCGAGTAATGGTCTCGGAACATACCAAATGCTGGCACAGAATAATAACTTAGGAATGCAGGATCATGTGGCTGAATCAAGTGGGTGTAGTAATAGAAAGAGGATAATTAATGGTCCTCCTGATGTTGTTGTGGAACGAAGGCAACGTAGAATGTTGAAAAATCGAGAATCTGCTGCTCGTTCTCGTGCAAGAAGACAGGCATATACTGTGGAGCTAGAGGCGGAGCTGAATCTGCTAAAAGAAGAGAATGAAAAGCTGAAACAAGTTCTGGCTGAAGCCGAGCGCAAGAGGAAACAAGAGCTTTTACAAAGGAAGCATCCAACAAAGACTCAAAAGGGGACAGAAAAATTAAGGGCAATAAGAAGGCCTATAAGTGCAATCTGGTGA 954 0.3857 MALQVQDLDQDVQLQEQEEATIGQPSKQNSILSLTLDEFQCKSGKSFGSLNMDEFIASIWNSNDEATTITTQTQKNTKNVATTEENSFSVPPLICKKTVDEVWSEIHKNTPQFKEENNLQRNETLMKQQTLGELTLEDFLVKAGVVQQSSSFPYQNHSGNVLRNATPMNNVASYGLSPSMGMGYSNQCVSSNGLGTYQMLAQNNNLGMQDHVAESSGCSNRKRIINGPPDVVVERRQRRMLKNRESAARSRARRQAYTVELEAELNLLKEENEKLKQVLAEAERKRKQELLQRKHPTKTQKGTEKLRAIRRPISAIW 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03563 317 Pfam bZIP transcription factor 235 287 IPR004827 GO:0003700|GO:0006355
Trre12g03563 317 SUPERFAMILY Leucine zipper domain 235 284 IPR046347 GO:0003700|GO:0006355
Trre12g03563 317 Gene3D - 233 289 - -
Trre12g03563 317 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 27 288 IPR043452 GO:0003700|GO:0045893
Trre12g03563 317 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 238 253 IPR004827 GO:0003700|GO:0006355
Trre12g03563 317 SMART brlzneu 231 292 IPR004827 GO:0003700|GO:0006355
Trre12g03563 317 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 233 285 IPR004827 GO:0003700|GO:0006355
Trre12g03563 317 Coils Coil 254 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03563 Trre-Chr12 51513701 51515391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03563 9 317 bZIP Transcription Factor Family AT3G44460 44.311 3.27e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre12g03563 bZIP_1 5.6e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03563 K14432 - gmx:100820370 323.939