Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03552 ATGGGTTTGAGAGATAAGTGCAATGTAGAAGACAAGAATTTATATCTTCAAACCCCAACTTTCATTGAATGGCTCAAACCTTCTTCATCACTCTCATCTTCTCCTTCATCATCTTTAACTCATCAACAAGAAATATCTCAAGAAACTTTTCAGTTTTTACCCATCTATAGTGGAATTAAGTCCTTTGAGGAAAATCATGGGATGCAAAAGGAAGATTTTGAAGTAAAAGAAGAGAAAGTGGAAAAAGTAACTGTGGCTTTGCACATTGGATTGCCTAACATAGGAGGAGGTGAATCTTATGATCATGAAGAGAAGAATAAGGTTTTTGATGAGAAGAATAAAGTTAATGAAAAAGAATTAAAGAAAAACTTGCATGGTTTTTGTTTTAAGGAAGAAAAAAGGTTTTGGATACCAACTCCTGCTCAGATCCTTGTTGGACCTATGCAATTTGCTTGCTCCATATGCAACAAGACTTTCAATAGATACAACAATATGCAGATGCATATGTGGGGACATGGATCAGAATTCAGGAAAGGACCAGACTCACTTAAAGGAACACAACCAGCAGCAATGTTAAGATTACCATGTTATTGTTGTGCTAATGGTTGCAAGAACAACATCAATCATCCAAGAGCAAAACCATTGAAAGATTTTAGAACTCTCCAAACTCATTACAAAAGAAAGCATGGAACAAAACCATTTATTTGCAGAAAATGTTCTAAAGCATTTGCTGTTAAAGGTGATTGGAGAACTCATGAGAAAAATTGTGGAAAGTTTTGGTATTGTACTTGTGGTTCTGATTTTAAACACAAAAGATCTCTTAAAGATCATGTTAGATCCTTCGGAAAAGGTCACTCCCCAAATCCTTCTCTTGAAGGGTTCGAAGACGAGAAAGAATGTAGCAATACTGGGTCCGATGATGATGAAGTTGCTCATGGATGA 942 0.3577 MGLRDKCNVEDKNLYLQTPTFIEWLKPSSSLSSSPSSSLTHQQEISQETFQFLPIYSGIKSFEENHGMQKEDFEVKEEKVEKVTVALHIGLPNIGGGESYDHEEKNKVFDEKNKVNEKELKKNLHGFCFKEEKRFWIPTPAQILVGPMQFACSICNKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCANGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFICRKCSKAFAVKGDWRTHEKNCGKFWYCTCGSDFKHKRSLKDHVRSFGKGHSPNPSLEGFEDEKECSNTGSDDDEVAHG 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03552 313 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
Trre12g03552 313 Pfam C2H2-type zinc finger 150 169 - -
Trre12g03552 313 SMART c2h2final6 150 172 IPR013087 -
Trre12g03552 313 SMART c2h2final6 234 254 IPR013087 -
Trre12g03552 313 MobiDBLite consensus disorder prediction 278 313 - -
Trre12g03552 313 PANTHER ZINC FINGER PROTEIN WIP2 27 302 IPR043584 GO:0003700|GO:0010468
Trre12g03552 313 SUPERFAMILY beta-beta-alpha zinc fingers 220 254 IPR036236 -
Trre12g03552 313 Gene3D Classic Zinc Finger 193 283 - -
Trre12g03552 313 MobiDBLite consensus disorder prediction 290 313 - -
Trre12g03552 313 FunFam Zinc finger protein WIP2 203 285 - -
Trre12g03552 313 Gene3D Classic Zinc Finger 149 172 - -
Trre12g03552 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 177 IPR013087 -
Trre12g03552 313 SUPERFAMILY beta-beta-alpha zinc fingers 128 173 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03552 Trre-Chr12 51341058 51344110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03552 10 303 C2H2 Transcription Factor Family AT1G08290 57.612 9.23e-122 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g03552 zf-C2H2_6 9.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03552 - - tpra:123899635 622.468