Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03549 ATGTTTCTTCCGGCAGAGGTGGTGGTTTTGGCTCGATTCTGGAGGTTGGGTGTGGTCTTTGTGTTGGTGGCTGAGGTGGTGAATGGCAGTGGTGGTGTTTGGCTGAGGTGGGGTTTGGTTGAGGTTGTCTCCGTTTTGTTCTCCGTCTTTGTGTTGGCGTTGAGATTCGATAACAATAATTCTCGTAACGAAAAAGAATGGCGGAAGAACACCGATGTCAAGCACCACGATTATGCGTTAACAATTGCGCTTAAGGAACAACAAGCTTCATCGGCAAAGCTTGTTCTCAATCAATCAATTGTAGCACCGACGAATTCACCTGCGGTGGCGGTGGTTACTGAACCGTCTTCCTCGTCGCCGGATCCTGTTGCGCCGCCTAAAGTTGTGGTGGAGGAGAAACCGTTGCAACAGAATCGGTGTATGACGTGTAGGAAGCGCGTGGGACTCACGGGGTTTAAGTGCAAGTGTGGGATGATGTTGTGTGGGACCCACCGTTATCCGGAGCAGCATGATTGTGAGTTTGATTTCAAGGGGTTGGGAAAAGAGCAGATCGCGAAAGCGAATCCGGTGGTGAAAGGTGAAAAGCTTGAGAAGATTTGA 600 0.4983 MFLPAEVVVLARFWRLGVVFVLVAEVVNGSGGVWLRWGLVEVVSVLFSVFVLALRFDNNNSRNEKEWRKNTDVKHHDYALTIALKEQQASSAKLVLNQSIVAPTNSPAVAVVTEPSSSSPDPVAPPKVVVEEKPLQQNRCMTCRKRVGLTGFKCKCGMMLCGTHRYPEQHDCEFDFKGLGKEQIAKANPVVKGEKLEKI 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03549 199 FunFam Zinc finger AN1-type containing 6 115 195 - -
Trre12g03549 199 PANTHER AN1-TYPE ZINC FINGER PROTEIN 90 199 - -
Trre12g03549 199 Pfam AN1-like Zinc finger 140 176 IPR000058 GO:0008270
Trre12g03549 199 SMART AN1_Zf_4 140 177 IPR000058 GO:0008270
Trre12g03549 199 ProSiteProfiles Zinc finger AN1-type profile. 134 180 IPR000058 GO:0008270
Trre12g03549 199 Gene3D - 113 195 IPR035896 -
Trre12g03549 199 SUPERFAMILY AN1-like Zinc finger 126 194 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03549 Trre-Chr12 51249460 51259111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03549 120 199 C2H2 Transcription Factor Family AT3G52800 60.976 4.35e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03549 - - gmx:106795660 160.999