Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03548 ATGTACAGCAATTTCAAGGAACAAGCGATAGAGTACGTGAAACAAGCGGTTCATGAAGACAATGCTGGTAACTATGCAAAAGCGTTTCCTTTATATATGAACGCTTTGGAGTATTTCAAAACTCATTTGAAGTACGAAAAGAACCCTAAAATCAGAGAAGCTATTACGCAAAGATTCACTGACTATTTACGTCGTGCTGAAGAGATTAGGGCTGTACTTGATGATGGTGGACCTGGTCCAGCTTCTAATGGTGATGCTGCTGTTGCTACAAGGCCAAAGAGTAAACCTAAGGATGGTGCTGGTGGTGGTGGTGGTGAAGGTGGAGGAGATGGGGAGGATCCGGAACAGGCGAAGCTTAGGGCCGGGTTGAATTCGGCGATTATTAGGGAAAAACCTAATGTTAAGTGGAATGATGTTGCTGGGTTGGAGAGTGCTAAACAGGCTTTGCAAGAAGCTGTTATTTTGCCTGTGAAGTTTCCTCAGTTTTTTACTGGTAAAAGACGACCATGGAGAGCATTTTTGTTGTATGGACCTCCAGGAACTGGGAAATCATATTTAGCTAAGGCAGTTGCAACTGAGGCTGATTCCACATTTTTCAGTATTTCTTCATCAGATCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAACTTGTTTCAAACCTTTTCCAAATGGCCCGAGAAAATGCCCCCTCTATCATATTTGTTGATGAAATAGATTCCCTATGTGGCCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATCAAAACAGAACTTTTGGTGCAGATGCAGGGTGTAGGAAACAATGACCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCTTATGCTTTAGACCAGGCAATTAGGCGGCGTTTTGATAAGCGTATATATATTCCACTACCAGATTTGAAGGCTCGCCAACACATGTTCAAGGTGCATCTTGGAGATACTCCTCATAATTTGACTGAAAGGGATTTTGAGTACTTGGCTAGCAGGACAGAGGGGTTTTCCGGTTCAGATATATCTGTCTGCGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTCTTCTTTAAAAGTCCAGAGGGTATGTGGATCCCATGCGGACCAAAGCAACAAGGTGCAGTTCAAACTACAATGACGGATCTTGCTACAAAAGGACTTGCGTCTCAGATTCTTCCACCCCCTATTACGAGAACAGATTTTGAAAAGGTTCTGGCAAGACAAAGGCCTACAGTAAGCAAAACTGACCTTGAGGTTCATGAGAAGTTCACAAAGGAATTTGGAGAAGAAGGTTAA 1323 0.4278 MYSNFKEQAIEYVKQAVHEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIREAITQRFTDYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKSKPKDGAGGGGGEGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARENAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTERDFEYLASRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGPKQQGAVQTTMTDLATKGLASQILPPPITRTDFEKVLARQRPTVSKTDLEVHEKFTKEFGEEG 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03548 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 436 IPR027417 -
Trre12g03548 440 Gene3D - 6 75 - -
Trre12g03548 440 FunFam Vacuolar protein sorting-associated protein 4 132 312 - -
Trre12g03548 440 Pfam Vps4 C terminal oligomerisation domain 373 437 IPR015415 -
Trre12g03548 440 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Trre12g03548 440 Gene3D - 132 428 IPR027417 -
Trre12g03548 440 PANTHER AAA DOMAIN-CONTAINING 19 438 - -
Trre12g03548 440 MobiDBLite consensus disorder prediction 73 116 - -
Trre12g03548 440 SMART AAA_5 169 305 IPR003593 GO:0016887
Trre12g03548 440 CDD RecA-like_VPS4 131 301 - -
Trre12g03548 440 SMART smart 2 79 IPR007330 -
Trre12g03548 440 SUPERFAMILY MIT domain 2 81 IPR036181 -
Trre12g03548 440 Gene3D - 305 420 - -
Trre12g03548 440 CDD MIT_VPS4 4 77 IPR045253 -
Trre12g03548 440 ProSitePatterns AAA-protein family signature. 275 294 IPR003960 GO:0005524|GO:0016887
Trre12g03548 440 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Trre12g03548 440 FunFam vacuolar protein sorting-associated protein 4A 305 420 - -
Trre12g03548 440 Pfam ATPase family associated with various cellular activities (AAA) 174 303 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03548 Trre-Chr12 51231250 51235212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03548 168 361 Calmodulin-binding Proteins AT3G56690 36.224 2.57e-34 134