Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03526 ATGGCTGACCATGAGGGAAGAAACACCATAGACAATCATGAGAATAACCCTAATGAAATATATTCGCACTTGCTTGAGATAGCTAGTGGAGTTGATTTGTTGAAGAGTGTTGTTGACTACGCTCATCAACAAGGTAGGGGAATATGCCTTCTCGGTGGAAGCGGGTTAATGGCGCAAGTCACACTTCATCTATCCAATGGCAAAGTTGGAACCCTTTGTGGAATATTTTAA 231 0.4199 MADHEGRNTIDNHENNPNEIYSHLLEIASGVDLLKSVVDYAHQQGRGICLLGGSGLMAQVTLHLSNGKVGTLCGIF 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03526 76 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 76 IPR014476 GO:0003680
Trre12g03526 76 Pfam Plants and Prokaryotes Conserved (PCC) domain 23 66 IPR005175 -
Trre12g03526 76 SUPERFAMILY AF0104/ALDC/Ptd012-like 18 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03526 Trre-Chr12 50933576 50933806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03526 15 62 AT-hook Motif Nuclear Localized (AHL) Family AT3G04570 45.833 2.00e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03526 - - psat:127088334 72.7886