Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03518 ATGTCAAGGCCAATCAAGCTGTTAACTGAGATCCATAGTCGAAAAGAACTTTGGAAGATTGCTGTCAAGGTGAAAGACAAATGGAATGTATACAAGGATGGTAAACAGAGCTTCGAAGTTTTGGTTGTTGACGCCGAGGGAAATGACATTTTAGTCATAGTACCACCTGAGTTAAATGCCAACTTTGATCAAAAAATTGTTGAGAACAACACTTATTGCTTTGAAAACTTCCAAGTTTTGAAGAATGAAGATCAATTTAAGGTTTCACAAAATCAGTATAAACTGAGGTTCAATGGATCAACTTTGCTTTACGATGTTAATGTACACCAAATTCCAGACGCAACTACAAATTTTAAAGACTTTGTTGAGATTCTCTCTGGAAAATGGCGTGAAGATGTACTATATGATGTCATTGGAGTCTTAGATGAAATTGGATATTCACAAACAATGAAAGGAACCCGGAAAATTCAGGTCAATTTCAAACTCAGAGATCTAAGTGACAACAAGATCAGTTGTACTTTATGGGAAGACTATGCTATGAAGTTCATAACATATACTAGAGAAAAGTCTGATGCTGGACCTACTATAATTGTCATGAAATATGCAAAAATCAAGCCAGAAGGCCAGTATCCGCTGACTGTTTCAAACACTTGGTCCACTACAAAACTTTTTATCAATGACGACATCAAAGAAATTGTTGAGTTCAAAAAAAGCTTAGAATTGGCTATATCAGAGGGAACATTTGAGCCAATTGTTGATACACCGTCACAACTCATGTCCCAATATTCTGGAGGGTCGCAGTATACTCCAGAACAAAAATTCCTTCACAAATGTGAACTAATGCCACTTTCTAAAGTTGTCAATCTGACGATGGATAGTCAAGTTGTAACTGTTGTTGACACAGTTTGCGTCAAGACAAGCAAAAATGGCTGGTATTTCCAAGCTTGCTTTCATTGCCCCAAAGCAGCTTTTGGAGATAAGCCACCTTATAAGTGTGAAGCTGGTCATGAGACTGAAACCCAAATATGGAAGTACAGATTGGATATGGAGGTTGTGTATAACAACACTGAAAGTGTTTTCACATTTTGGGACCGCGAATGCACCCAAATGTTGGGAATATCCGCATCTGATCTTCGTGACAAAATGATTGCAATCGGTATAGCTGATCCACGCAATTATCCTGTTGACATCGACAAAATGGAGGGTCGAACAGTAGCAGCTAGGATTAAGTGGCAGTTTAAATGGAAAAATGCATCTGTCAATCAAATTCATGAGGGAAAAGAGTTTATTGCTGATCTCAAATCACGTTTTCCATCTGCTCAGGATTCAAAAAATGAGGATTCCAACAATGACAAACCAACTGCTGAACCTACTATTCAGGAGATAACCACTTCACGGTCTATCGAAAACACGGAAGATGTTGTTATCCCTACGGTTTCTTTATCCGATGAGATTGATCCTGATCAACTTTCAATGATAACACCTTCTAAACGAACTGCCACTTCTATCAAAAAAGAGATAATGGTTGAAGAAACTGAAGATCTCATTGGAAGTAAGATGTCTTCAACAAAAACTGTGTTGAACAAGAACAAGAATAAGCATGCAAAAAAATAG 1614 0.3761 MSRPIKLLTEIHSRKELWKIAVKVKDKWNVYKDGKQSFEVLVVDAEGNDILVIVPPELNANFDQKIVENNTYCFENFQVLKNEDQFKVSQNQYKLRFNGSTLLYDVNVHQIPDATTNFKDFVEILSGKWREDVLYDVIGVLDEIGYSQTMKGTRKIQVNFKLRDLSDNKISCTLWEDYAMKFITYTREKSDAGPTIIVMKYAKIKPEGQYPLTVSNTWSTTKLFINDDIKEIVEFKKSLELAISEGTFEPIVDTPSQLMSQYSGGSQYTPEQKFLHKCELMPLSKVVNLTMDSQVVTVVDTVCVKTSKNGWYFQACFHCPKAAFGDKPPYKCEAGHETETQIWKYRLDMEVVYNNTESVFTFWDRECTQMLGISASDLRDKMIAIGIADPRNYPVDIDKMEGRTVAARIKWQFKWKNASVNQIHEGKEFIADLKSRFPSAQDSKNEDSNNDKPTAEPTIQEITTSRSIENTEDVVIPTVSLSDEIDPDQLSMITPSKRTATSIKKEIMVEETEDLIGSKMSSTKTVLNKNKNKHAKK 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03518 537 CDD RPA1_DBD_A_like 19 101 - -
Trre12g03518 537 SUPERFAMILY Nucleic acid-binding proteins 117 240 IPR012340 -
Trre12g03518 537 SUPERFAMILY Nucleic acid-binding proteins 7 104 IPR012340 -
Trre12g03518 537 MobiDBLite consensus disorder prediction 452 469 - -
Trre12g03518 537 MobiDBLite consensus disorder prediction 436 469 - -
Trre12g03518 537 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Trre12g03518 537 Gene3D - 110 248 IPR012340 -
Trre12g03518 537 CDD RPA1_DBD_B_like 136 239 - -
Trre12g03518 537 SUPERFAMILY Nucleic acid-binding proteins 303 417 IPR012340 -
Trre12g03518 537 Gene3D - 3 104 IPR012340 -
Trre12g03518 537 Gene3D - 260 435 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03518 Trre-Chr12 50865124 50868473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03518 1 380 Core DNA Replication Machinery Family AT5G08020 22.864 2.46e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03518 - - tpra:123887332 546.969