Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03513 ATGAAGGTTATCGCTGCTTACTTGTTGGCCGTTTTGGGAGGCAACGCATCACCTTCAGCTGCTGATGTTAAACAAATTCTTGGATCAGTTGGAGTTGATGCCGAGGATAACAACATTGAGTTGCTCCTAAGTGAAGTTAAGGGCAAAGACTTCGCCGAGCTTATTGCTAGTGGAAGAGAAAAGTTGGCTTCAGTTCCTTCTGGTGGCGGTGCTGTTGCAGTCTCTGCTGCACCAGGAGGAGGTGCTGCAGCTGCCGCACCTGCTGCTGAAGCTAAGGAGGAGAAGAAGGTCGAAGAAAAAGAAGAATCCGATGATGATATGGGATTCAGCTTATTTGATTAA 342 0.4737 MKVIAAYLLAVLGGNASPSAADVKQILGSVGVDAEDNNIELLLSEVKGKDFAELIASGREKLASVPSGGGAVAVSAAPGGGAAAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03513 113 Hamap 50S ribosomal protein L12 [rpl12]. 2 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Trre12g03513 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Trre12g03513 113 CDD Ribosomal_P2 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Trre12g03513 113 FunFam 60S acidic ribosomal protein P2 1 59 - -
Trre12g03513 113 MobiDBLite consensus disorder prediction 89 103 - -
Trre12g03513 113 MobiDBLite consensus disorder prediction 83 113 - -
Trre12g03513 113 Pfam 60s Acidic ribosomal protein 17 112 - -
Trre12g03513 113 Gene3D - 1 59 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03513 Trre-Chr12 50841441 50842432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03513 1 70 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 78.571 1.37e-33 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03513 K02943 - cit:102611784 126.716