Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03512 ATGGATGAGCACGAAAATGGCGCGAATGCAAGCGAAGATGAACCCATAGTTGGACCCGGTCCAGCTCCTCGTGCTCGACCCAAACGACCTCTTCAATTCGAACAAGCTTATCTCGATGCTTTACCATCCGCTAATATGTACGAGAAAAGCTATATGCATCGTGATGTCGTTACTCATGTTGCTGTTTCGGCTGCAGAGTTTTTCATCACTGGAAGTGCAGACGGGCATTTGAAGTTTTGGAAGAAAAGGCCTATTGGTATTGAGTTTGCAAAGCACTACAGATCTCATCTTGGTCCTATTGAAGGTCTAGCTGTTAGTATTGATGGTCTGCTTTGCTGTACAATATCAAATGACCGTTCTGTAAAAGTATACGATGTAGTCAACTTTGATATGATGGTGATGATTCGGTTGCCATACATTCCTGGTGCTATTGAATGGGTTTATAATCAAGGGGATGTCAAAGCTAGTCTTGCTATTAGCGATAGGAACTCATCTTTTGTTCACATATATGATGCACGATCTGGTTCAAATGATCCCATCATCTCTAAAGAGATTCATATGGGTCCTATTAAAGTTATGAAGTTCAACCCTGTGTATGATACTGTAATTTCGGCAGATACAAAGGGTATCATTGAATACTGGAGCCCAACAACACTCCAGTTCCCGGAGGATGAGGTGAGTTTTAAGGTTAGAAGTGATACTAACCTCTTTGAAATATTAAAATGCAAGACTTCTGTTTCGTCTATTGAGGTCAGTCCAGATGGTAAACAATTTTCCATTACATCACCTGACCGTAGGATACGTGTGTTTTGGTTCAGAACGGGTAAACTGAGGCGTGTTTATGATGAATCCTTGGAGGTTGCTCAAGATCTCCAAAGAAGTGATGCTCCATTATATCGATTGGAAGCCATTGATTTCGGTCGAAGAATGGCAGTTGAGAAAGAAATAGAGAAGACAGAAAGTGCACCACAACCAAATGCAGTTTTTGATGATAGTTCTAACTTTCTTATATATGCAACCTTGCTTGGGATTAAAATTGTTAATTTGCACACCAATAAAGTTGCTCGAATACTTGGAAAGGTGGAGAATAATGATAGGTTCTTAAGAATAGCTTTATATCATGGTGAACGAAGCAGCAAAAAAGTAAGAAAGATTCCTTCAGTAGCTGCGAATGCTAATGAGAGCAAAGAGCCTTTGACAGATCCCACTCTCCTATGTTGTGCTTTCAAAAAGCATAGGATATATTTATTCAGAGAGCCTGAGGAGCCTGAAGATGCAACTAAGGGAAGAGATGTGTTCAATGAAAAGCCTCCTGCTGATGAACTTTTGGCAGTTTCAGATATTGGAAAGGCACTTACAACATCACTTCCTGAGAATGTGATTATGCACACCACTATGGGTGATATTCACATGAAGTTGTACCCAGAGGAATGTCCAAAATCTGTGGAAAACTTTACAACTCACTGCAAAAACGGCTATTATGACAATCTTATTTTTCACAGAGTCATCAAAGGCTTCATGATACAAACAGGAGATCCTTTAGGAGACGGCACTGGTGGGCAATCCATTTGGGGAAGAGAATTTGAAGATGAATTTCACAAAAGTTTAAGGCATGATAGGCCTTTCACATTGTCAATGGCAAACGCGGGGCCAAATACCAACGGTTCTCAGTTTTTTATCACCACAGTGGCTACCCCATGGCTGGACAACAAGCACACAGTATTTGGTAGAGTTGTGAAGGGAATGGATGTTGTCCAGGCTATAGAAAAAGTGAAGACAGACAAGACAGATAAGCCATATCAAGATGTTAAAATTTTAAATGTCACTGTACCAAAGTCTTGA 1842 0.4045 MDEHENGANASEDEPIVGPGPAPRARPKRPLQFEQAYLDALPSANMYEKSYMHRDVVTHVAVSAAEFFITGSADGHLKFWKKRPIGIEFAKHYRSHLGPIEGLAVSIDGLLCCTISNDRSVKVYDVVNFDMMVMIRLPYIPGAIEWVYNQGDVKASLAISDRNSSFVHIYDARSGSNDPIISKEIHMGPIKVMKFNPVYDTVISADTKGIIEYWSPTTLQFPEDEVSFKVRSDTNLFEILKCKTSVSSIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTESAPQPNAVFDDSSNFLIYATLLGIKIVNLHTNKVARILGKVENNDRFLRIALYHGERSSKKVRKIPSVAANANESKEPLTDPTLLCCAFKKHRIYLFREPEEPEDATKGRDVFNEKPPADELLAVSDIGKALTTSLPENVIMHTTMGDIHMKLYPEECPKSVENFTTHCKNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQAIEKVKTDKTDKPYQDVKILNVTVPKS 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03512 613 CDD cyclophilin_WD40 461 608 - -
Trre12g03512 613 Gene3D - 449 613 IPR029000 -
Trre12g03512 613 FunFam Peptidylprolyl isomerase domain and WD repeat-containing 1 441 611 - -
Trre12g03512 613 SUPERFAMILY Cyclophilin-like 458 610 IPR029000 -
Trre12g03512 613 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 494 511 IPR020892 GO:0003755|GO:0006457
Trre12g03512 613 Gene3D - 40 418 IPR015943 GO:0005515
Trre12g03512 613 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 557 569 IPR002130 GO:0000413|GO:0003755
Trre12g03512 613 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 542 557 IPR002130 GO:0000413|GO:0003755
Trre12g03512 613 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 570 585 IPR002130 GO:0000413|GO:0003755
Trre12g03512 613 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 499 511 IPR002130 GO:0000413|GO:0003755
Trre12g03512 613 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 473 488 IPR002130 GO:0000413|GO:0003755
Trre12g03512 613 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 81 IPR001680 GO:0005515
Trre12g03512 613 ProSiteProfiles Ig-like domain profile. 216 317 IPR007110 -
Trre12g03512 613 FunFam Peptidylprolyl isomerase domain and WD-repeat protein 1 47 310 - -
Trre12g03512 613 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 460 610 IPR002130 GO:0000413|GO:0003755
Trre12g03512 613 Pfam WD domain, G-beta repeat 91 125 IPR001680 GO:0005515
Trre12g03512 613 Pfam WD domain, G-beta repeat 57 81 IPR001680 GO:0005515
Trre12g03512 613 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 456 610 IPR002130 GO:0000413|GO:0003755
Trre12g03512 613 SUPERFAMILY WD40 repeat-like 56 283 IPR036322 GO:0005515
Trre12g03512 613 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 455 609 IPR044666 -
Trre12g03512 613 MobiDBLite consensus disorder prediction 1 28 - -
Trre12g03512 613 SMART WD40_4 233 271 IPR001680 GO:0005515
Trre12g03512 613 SMART WD40_4 176 215 IPR001680 GO:0005515
Trre12g03512 613 SMART WD40_4 86 125 IPR001680 GO:0005515
Trre12g03512 613 SMART WD40_4 44 81 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03512 Trre-Chr12 50831822 50838798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03512 460 610 U-box Gene Family AT5G67530 47.020 1.13e-41 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03512 K12736 - gmx:100792207 1158.28