Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03511 ATGGACCCATGGCTCGACGATCTCACCGACGACCTTCAAAGCCTAAGTTTCGCCTCCACAACAACCACCACCGGCGCCGACATCAAACGAAGCACAAGCTTCGGTTCCACAACAACCGCTTCAACTTCCGCTCATCTCTCAACAAGATCCCTAAATCCTCCAATCACTAAACATCACGCTCCTTTATCCGACCCTCGTTGGTCCGCCATTCACCGGATCCGATCAGTATCACCTTCTCGTCATATTCTTCCTTCTGACCTTCGATTCTCTCGCCGTCTCGGTTCCGGTGATATTAGTTCTGTTTATCTTGCGGAACTTATTGACGACGGACAAATTCCGGCGATGTTTGCGGCGAAAGTGATGGATAAGAAGGAGTTAGTTAGTAGAAGTAAAGAAGGAAGAGCGAAAACGGAGAGAGAAATACTTGAATCTCTTGATCATCCTTTTTTGCCTACTCTTTATGCTACAATCGATGCTACGAAATGGCTTTGTCTTTTGACGGAGTTTTGTCCCGGCGGCGATCTTCATGTTCTCCGGCAACGGCAACAAAACAAACGGTTCTCTGAATCCGCTGTCAGATTCTATGCATCAGAGGTGTTGATGGCACTTGAATACCTTCACATGTTGGGAATAGTATACCGTGATCTCAAGCCCGAGAACGTGTTAGTAAGATCAGATGGCCATATCATGCTCACAGATTTTGATCTCTCATTAAAATGTGATGCTGATTCAACACCAGCCCAGATAATAATCTCAAGTCAAAACTCTCCACAAGTAATCCCACAAAAAAATCCCCACACTGGATCCTCTCAATTCGCCTCCTCGTCATGCATACTACCAAACTGTATTGTCCCAGCAGTGTCTTGTTTCCAACCAAAACGCAAACGAAAGAAGAAACAAAACCAGCTTAATGGACCTGAATTTGTTGCTGAGCCCATTGATGTTCGATCCATGTCATTTGTTGGGACCCATGAATACTTGGCTCCTGAGATAGTGTCTGGTGAAGGACATGGTAGTGCTGTGGATTGGTGGACCTTAGGAATATTTATATTCGAATTATTTTATGGTGTCACACCTTTTAGAGGCTTGGATAATGAATTAACTTTAGCAAATATTGTGGCTCGAGCTTTGGAGTTCCCCAAGGAACCCACCGTGCCAGCCACGGCAAAAGATCTTATCTCACAGTTATTGGTTAAGGATCCAGCTAGGAGACTTGGATCAATAATGGGGGCTTCTACAATCAAACACCACTCGTTTTTTCAAGGTGTGAATTGGGCATTGTTAAGGTGTACAACTCCACCTTATGTTCCACCACCTTATACTAAAGATAAAGATGATTTATCTGATGATGATAGTTGTCCTCAAACTCCTGTTGATTATTATTGA 1386 0.4401 MDPWLDDLTDDLQSLSFASTTTTTGADIKRSTSFGSTTTASTSAHLSTRSLNPPITKHHAPLSDPRWSAIHRIRSVSPSRHILPSDLRFSRRLGSGDISSVYLAELIDDGQIPAMFAAKVMDKKELVSRSKEGRAKTEREILESLDHPFLPTLYATIDATKWLCLLTEFCPGGDLHVLRQRQQNKRFSESAVRFYASEVLMALEYLHMLGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCDADSTPAQIIISSQNSPQVIPQKNPHTGSSQFASSSCILPNCIVPAVSCFQPKRKRKKKQNQLNGPEFVAEPIDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFIFELFYGVTPFRGLDNELTLANIVARALEFPKEPTVPATAKDLISQLLVKDPARRLGSIMGASTIKHHSFFQGVNWALLRCTTPPYVPPPYTKDKDDLSDDDSCPQTPVDYY 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03511 461 Gene3D Transferase(Phosphotransferase) domain 1 174 283 - -
Trre12g03511 461 MobiDBLite consensus disorder prediction 28 54 - -
Trre12g03511 461 MobiDBLite consensus disorder prediction 439 461 - -
Trre12g03511 461 FunFam serine/threonine-protein kinase D6PKL2 86 173 - -
Trre12g03511 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Trre12g03511 461 MobiDBLite consensus disorder prediction 28 62 - -
Trre12g03511 461 PIRSF ILK 18 265 - -
Trre12g03511 461 PIRSF ILK 293 406 - -
Trre12g03511 461 SUPERFAMILY Protein kinase-like (PK-like) 67 453 IPR011009 -
Trre12g03511 461 FunFam serine/threonine-protein kinase D6PK-like 174 241 - -
Trre12g03511 461 ProSiteProfiles Protein kinase domain profile. 87 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03511 461 Gene3D Phosphorylase Kinase; domain 1 86 173 - -
Trre12g03511 461 Gene3D Transferase(Phosphotransferase) domain 1 316 438 - -
Trre12g03511 461 PANTHER FLIPPASE KINASE 1-RELATED 31 442 - -
Trre12g03511 461 FunFam serine/threonine-protein kinase D6PK-like 315 438 - -
Trre12g03511 461 Pfam Protein kinase domain 317 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03511 461 Pfam Protein kinase domain 90 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03511 461 Gene3D Phosphorylase Kinase; domain 1 441 451 - -
Trre12g03511 461 CDD STKc_phototropin_like 85 430 - -
Trre12g03511 461 SMART serkin_6 87 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03511 Trre-Chr12 50821797 50827914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03511 1 461 AGC Kinase Gene Family AT3G44610 64.195 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre12g03511 Pkinase 4.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03511 K08286 - gmx:100792738 696.041