Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03508 ATGAACTTGGAGAATGATTCTACTACAAATTCTCATGCAAAGACAAAACCAAAACCAAACACTCACAAGAAAAAAACAGGAACAAAGAAATTCAAGGAAACAAGGCACCCAATTTATAGAGGAATTCGTCAAAGAAATGAAAACAAATGGGTGTGTGAAATTCATGAACCAAACAAGAAAAAATCAAGAATATGGCTTGGAACTTACCCTACACCTGAAATGGCAGCTATAGCACATGATATAGCTATCCTAGCAATTAAGGGCACTTCAGCAATATTCAATTTTCCTAATTCTATTTCTCTTCTTCCAATTTTGAAATCAACTTCAGCTGAAGAGATAAGAGAAGCTGCAAAGACTTTTACAAACACTTCTTCTTTTAGAGATGAGACTAAGTCTTGTTTGGTTGAATGTAAAAGCCAAAAAAGTGTTTTTAAGGGTGATAATATTGAGATTATGAATAATAATAATAATGATGAGTCTAAAACAATGTTTTTTGATGAGGAGGTTTTGTTTAATATGCCTTGTTTTTTAGATAGTATGGCTGAGGGTTTGCTTATTACACCACCCTCCATGAAGAGTGCATTGGATTGGGACAATGTTGATTGTGAAATGGATTTGACATTATGGAAACATTAA 636 0.3318 MNLENDSTTNSHAKTKPKPNTHKKKTGTKKFKETRHPIYRGIRQRNENKWVCEIHEPNKKKSRIWLGTYPTPEMAAIAHDIAILAIKGTSAIFNFPNSISLLPILKSTSAEEIREAAKTFTNTSSFRDETKSCLVECKSQKSVFKGDNIEIMNNNNNDESKTMFFDEEVLFNMPCFLDSMAEGLLITPPSMKSALDWDNVDCEMDLTLWKH 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03508 211 CDD AP2 37 98 IPR001471 GO:0003700|GO:0006355
Trre12g03508 211 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Trre12g03508 211 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Trre12g03508 211 MobiDBLite consensus disorder prediction 1 31 - -
Trre12g03508 211 MobiDBLite consensus disorder prediction 1 15 - -
Trre12g03508 211 SUPERFAMILY DNA-binding domain 38 98 IPR016177 GO:0003677
Trre12g03508 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 15 210 IPR045277 GO:0003700
Trre12g03508 211 Pfam AP2 domain 37 88 IPR001471 GO:0003700|GO:0006355
Trre12g03508 211 ProSiteProfiles AP2/ERF domain profile. 38 96 IPR001471 GO:0003700|GO:0006355
Trre12g03508 211 Gene3D AP2/ERF domain 38 98 IPR036955 GO:0003700|GO:0006355
Trre12g03508 211 SMART rav1_2 38 102 IPR001471 GO:0003700|GO:0006355
Trre12g03508 211 MobiDBLite consensus disorder prediction 16 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03508 Trre-Chr12 50746229 50746864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03508 23 209 AP2-EREBP Transcription Factor Family AT5G51990 44.503 1.02e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre12g03508 AP2 4.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03508 - - gmx:100803317 240.35