Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03505 ATGAGATTGGAGAAATGTTGGTTTTGTTCTTCAACTGTATATCCTGGACATGGAATTCAGTTTGTTCGTAATGATGCAAAGATTTTTCGGTTTTGTAGATCAAAATGCCACAAGAACTTCAAAATGAAGAGAAATCCTCGGAAAGTAAAATGGACCAAGGCATATAGGCGTGTGCATGGAAAGGATATGACACAGGATTCAACCTTTGAGTTTGAGAGAAAGCGAAACAGGCCTGAGAGATACGACAGGAATCTTGCTGAGAATGTACTCAAGGCAATTCCTAAGATTGATAAGATCAGAGTCGGTAGGGAGGAGAGACACCATAAGAACAGGATGAAAGGCAACAAGGCGAAAGCGCTGAAGGAATCAAAGAAGGAGGTGGATAACGACATCCATTTGATCAGAGCTCCTAATGCGCCACAAGATAAGATCAAAGTCATGGTTACCCAACAACAACCACAAGAGAATCCTCTCATGGAAGAGTGA 486 0.4156 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAENVLKAIPKIDKIRVGREERHHKNRMKGNKAKALKESKKEVDNDIHLIRAPNAPQDKIKVMVTQQQPQENPLMEE 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03505 161 CDD Ribosomal_L24e_L24 1 54 IPR000988 -
Trre12g03505 161 SMART 4TRASH 6 44 IPR011017 -
Trre12g03505 161 FunFam probable ribosome biogenesis protein RLP24 1 67 - -
Trre12g03505 161 Gene3D Ribosomal protein L24e 1 68 IPR038630 -
Trre12g03505 161 MobiDBLite consensus disorder prediction 116 132 - -
Trre12g03505 161 MobiDBLite consensus disorder prediction 102 161 - -
Trre12g03505 161 Pfam Ribosomal protein L24e 1 65 IPR000988 -
Trre12g03505 161 MobiDBLite consensus disorder prediction 144 161 - -
Trre12g03505 161 ProSitePatterns Ribosomal protein L24e signature. 8 25 IPR023442 -
Trre12g03505 161 PANTHER 60S RIBOSOMAL PROTEIN L24 1 143 IPR000988 -
Trre12g03505 161 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03505 Trre-Chr12 50719874 50721497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03505 1 161 Cytoplasmic Ribosomal Protein Gene Family AT2G44860 70.807 1.86e-83 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03505 K02896 - gmx:100306000 283.493