Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03488 ATGGAGTTTTGGGGTGCTGAAGTTAAGGTTGGAGAAACCCTTAAGGTTGACCCAAATGAATTTGAGGCATGCATTCATCTTTCACAGGCCGCATTAGGTGAATCAAAGAAAGACAAAGGAAATGATTCTGTAGTTCTTTTTGTGAAAGTTGGTGAACAGAAGCTAGTTTTGGGAACCCTTCTTAAGGACAAAATCCCTCAGATTTCTCTTGAATTGGTTTTGGATAAGGAGTTTGAGCTTTCTCATAATTCCAAAACTGCTAGTGTCCATTTCTGTGGATACAAAGCTCTTTACCCTGGCGATGATGATAGCGAGGATGATTATACTGAGAGTGATGAGGAGGAGATCCCATTGGCGGTTGCAGAGAATGGTAAACCAGAAACAAAAGCAGAGGAATTGAAGGTTGCTGAACCTAAAAAAGCTAATGCCAAGGGTCCTCACCCTGCCAAGAACGCTGCACCTTCCAAACCTGCACCTGCCAAACCTACTAAACAAGTAAAGGTTGTTGATCCAAAGGAAGATTCTGATGAGGAATCTGATGAAGATGATGATGAGATCGGAAGCTCTGATGATGAGATGGAGGATGCTGACAGTGATGAAGAAGATGAGGATGACAGTGATGAAGAAGATGAGGAAGAGACTCCTGTGAAAAAGGTGGAGCAGGGAAAGAAGAGGGCCAATGAATCTGCTTCTAAAACTCCAGTTTCCTCCAAGAAGTCAAAAAATGCCACTCCTGAAAAGACTGATGGTAAGAAAGCTGGGCATACAGCAACTCCTCACCCAAAGAAGGGAGGAAAGACCCCCAACACAGATGCCAAAAGTCCCAAGTCTGGAGGACAACTATCCTGCGGTAGTTGCAGCAAGACATTCAACTCTGAAACAGGACTGCAACAACACAGCAAAGCCAAGCATGGTGCTCAGTAA 924 0.4405 MEFWGAEVKVGETLKVDPNEFEACIHLSQAALGESKKDKGNDSVVLFVKVGEQKLVLGTLLKDKIPQISLELVLDKEFELSHNSKTASVHFCGYKALYPGDDDSEDDYTESDEEEIPLAVAENGKPETKAEELKVAEPKKANAKGPHPAKNAAPSKPAPAKPTKQVKVVDPKEDSDEESDEDDDEIGSSDDEMEDADSDEEDEDDSDEEDEEETPVKKVEQGKKRANESASKTPVSSKKSKNATPEKTDGKKAGHTATPHPKKGGKTPNTDAKSPKSGGQLSCGSCSKTFNSETGLQQHSKAKHGAQ 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03488 307 MobiDBLite consensus disorder prediction 102 307 - -
Trre12g03488 307 MobiDBLite consensus disorder prediction 270 301 - -
Trre12g03488 307 FunFam Histone deacetylase HDT1 1 100 - -
Trre12g03488 307 Gene3D Nucleoplasmin core domain 1 98 - -
Trre12g03488 307 MobiDBLite consensus disorder prediction 242 256 - -
Trre12g03488 307 MobiDBLite consensus disorder prediction 103 117 - -
Trre12g03488 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 281 307 IPR013087 -
Trre12g03488 307 MobiDBLite consensus disorder prediction 125 144 - -
Trre12g03488 307 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Trre12g03488 307 MobiDBLite consensus disorder prediction 174 214 - -
Trre12g03488 307 ProSitePatterns Zinc finger C2H2 type domain signature. 283 304 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03488 Trre-Chr12 50549156 50552129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03488 1 306 C2H2 Transcription Factor Family AT5G03740 37.313 7.54e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g03488 NPL 9.2e-13 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03488 - - gmx:100795506 351.673