Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03481 ATGATGACGATTTTCTTTTTTTGGGCATGTGTTTACTCTGTTGATGAGTCTCCAACACGCTCAGAATCATCCATTGACGAAGCTTTTCAAAAATGGATGTCTGATTTTGATCGTACATATGCAAACAACACAGAGATGAAGAAACGTAGAGAAATATTCAAGAAGAAGTTGGAATTTATCGACAAGTTTAACAGTGAAGGTAACCACAGTTACACTGTGGGATTAAATCAATTCTCGGATTTAACCGAAGAAGAATGCCACGCTTTTACCGGTCACTCATACGAATATGATCTAACTATTAGAGGACTGTCTCTTAATTCATGTGCCAGGAAATATTTGGAGGAAGATTATTTTTACATAGAGTGTTCCTGGTATGTTGATGAATCTCTAAAACTCTCTGAATCAGAAGAAGCATCCATTGATCAAGAATTTCAAAAATGGTTGTTGGACGATGGTTGGACATACTCAAGGAGTACTGAGAATGATCAAATCAAATGTCATAATGCCCCCGGTTCTTTGAGAAGGTTAGGAATCGTAAGTCAGGTAAAGTTTGATAAGTTTGTTGAGCAAGGACGTGTTCTTCATAATTATGCTTCAATACTAGAGCTACTTTTACGTCTTCGGCAATGTTGTGACCATCCATTTCTCGTCATGAGCTGCGGGGATACTCAAGAATTTTCCGATCTAAACAAACTAGCTAAGCGCTTCCTTAGAGGAACTGGTAATGCTTCAGAAGGTGAAGTAAAAGATGCAGTCTCACGAGCTTATGTTGAAGAAGTTGTGGAAGAGTTACGTAGAGGGGAGCAGGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTGTTGACACCATGTGCTCACCGCCTTTGCCAGGAATGCCTCTTGGCAAGTTGGCGAAATTCTAGCTCTGGCTTATGTCCTGTTTGTAGTAATAAAATGAATGTGGTTGATATTGAGAATAACTTGGTAGAGTCATGCAAGATAACTGGTCTTTTGAATGAACTTGAAAATCTTCGCTCATTAGGATCTAAGAGCATAGTTTTTAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCGGAATAAAATATCATTTGTTCGACTTGATGGCACATTGAATTTGCAGCAGCGTGAAAAAGTAATCAAACAATTCTCAGAAGATAGCGACATACAGGACCCTTGGTGGAATCCAGCAGTTGAGGAACAAGCTGTTATGCGTATTCGTCGCATTGGACAAACAAAGAAGGTGGCTATCAAACGGTTTATTGTGAAGCATAGAAAAGTTTCGTTAATGGAGGAGGATCAGAATGTGACTGAGCCACCAAATAGTGATCCAGTGTTGAACCAGCAAACACCAGAAGCTGGTGGAAGTTTCCATCATGTCATAAATTTGAATACTGGCAAGGATGTAATGGCGAGTTTATATGAAATTTCTGCGCATTATCGTAGGGATGTTTGCGTTCTTTGTGCTGCAGGTGCTTTATCAAGTGTTGTCCTTCGTTCTTCACTTGGTACTTACATTAGGCGCGAGGGTCACTTTGAGATAATGTCTTTAACTCCGACAGAAAAACCGGGTAGCTTTTTCGCTTCACTTGCTGATACTAATACTGGAAGGGTTTTCGGAGGTGTTGTCGTCGGTTCACTCATAGCTTCTGGCCCTCTTCATTTTAATGTGTCTGATTTCAAGCAATCTAAGGAAATTCTGAAAAAGAACTCAGCTAGTTCTTCTGCATCTGCTGCAGGAGTATCAGATAATGTCAACATTAATCCTGCAAATGCTCAGAATGTGAACTCTGATTCTCAAGATCAATGA 1830 0.4005 MMTIFFFWACVYSVDESPTRSESSIDEAFQKWMSDFDRTYANNTEMKKRREIFKKKLEFIDKFNSEGNHSYTVGLNQFSDLTEEECHAFTGHSYEYDLTIRGLSLNSCARKYLEEDYFYIECSWYVDESLKLSESEEASIDQEFQKWLLDDGWTYSRSTENDQIKCHNAPGSLRRLGIVSQVKFDKFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSCGDTQEFSDLNKLAKRFLRGTGNASEGEVKDAVSRAYVEEVVEELRRGEQGECPICLEAFEDAVLTPCAHRLCQECLLASWRNSSSGLCPVCSNKMNVVDIENNLVESCKITGLLNELENLRSLGSKSIVFSQWTAFLDLLQIPFTRNKISFVRLDGTLNLQQREKVIKQFSEDSDIQDPWWNPAVEEQAVMRIRRIGQTKKVAIKRFIVKHRKVSLMEEDQNVTEPPNSDPVLNQQTPEAGGSFHHVINLNTGKDVMASLYEISAHYRRDVCVLCAAGALSSVVLRSSLGTYIRREGHFEIMSLTPTEKPGSFFASLADTNTGRVFGGVVVGSLIASGPLHFNVSDFKQSKEILKKNSASSSASAAGVSDNVNINPANAQNVNSDSQDQ 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03481 609 Pfam Plants and Prokaryotes Conserved (PCC) domain 466 567 IPR005175 -
Trre12g03481 609 SUPERFAMILY AF0104/ALDC/Ptd012-like 465 567 - -
Trre12g03481 609 Pfam Cathepsin propeptide inhibitor domain (I29) 29 85 IPR013201 -
Trre12g03481 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 320 IPR013083 -
Trre12g03481 609 MobiDBLite consensus disorder prediction 441 458 - -
Trre12g03481 609 MobiDBLite consensus disorder prediction 438 458 - -
Trre12g03481 609 ProSiteProfiles Zinc finger RING-type profile. 272 312 IPR001841 -
Trre12g03481 609 SMART ring_2 272 311 IPR001841 -
Trre12g03481 609 SUPERFAMILY Cysteine proteinases 22 99 IPR038765 -
Trre12g03481 609 Gene3D - 179 445 IPR027417 -
Trre12g03481 609 MobiDBLite consensus disorder prediction 581 609 - -
Trre12g03481 609 Gene3D - 13 92 - -
Trre12g03481 609 SMART Inhibitor_I29_2 29 86 IPR013201 -
Trre12g03481 609 Pfam Zinc finger, C3HC4 type (RING finger) 272 311 IPR018957 GO:0046872
Trre12g03481 609 ProSiteProfiles PPC domain profile profile. 459 588 IPR005175 -
Trre12g03481 609 CDD RING-HC 271 311 - -
Trre12g03481 609 ProSitePatterns Zinc finger RING-type signature. 287 296 IPR017907 -
Trre12g03481 609 SUPERFAMILY RING/U-box 259 316 - -
Trre12g03481 609 CDD SF2_C_SNF 325 428 - -
Trre12g03481 609 Gene3D - 465 583 - -
Trre12g03481 609 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 180 431 - -
Trre12g03481 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 435 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03481 Trre-Chr12 50474150 50479472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03481 180 441 RAD5 or RAD16-like Gene Family AT5G22750 67.224 1.07e-126 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03481 K15505 - gmx:100794558 417.927