Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03476 ATGGGGAGCAAGGTCACCGATCCCAATCTCTCCACCGTCCGATCCATCGTCGGTTCCGAATTCTCCGACATGGACATCATCAGAGCTCTACACATGGCCAAAAACGACGTCACTGCCGCCATTAACATCATCTTCGATACCAATACTCCTAAATTGAAACCAACACGCACAATCAATAAACAACGAGTTTCTCCTCCGAAATCATCTCCACGCGCCGTCACTACCAGCTCCAAGAAAAGCAACGCTGATGTAGAAAATAAGAAATGTTCCGTTGCGTCTGAGTCGGATTCAGAATCGGTTGATTGGTGGTTCGTTGGTTCTGGCGAAGTGGCAGGGCTGTCGACGTGTAAAGGAAGGAGTTTAAAGTCCGGTGATAAAGTGATTTTCAAGTTTCCAGTAAAAAAGGTTTCTGTTTCACCGTCTCCGGGTAAGGGTTTTGGTCGAGCAGCGAGTTGTTCCGAGATTGTTCGATTTTCGAATGAACAAGATTGGGAGATTGGCAGAATACCGAATGAATGGGCTCGATGTTTGTTGCCGCTGGTGCGGGATAATAAGGTTAGAGTTGAAGGGAAATGTGAATTTGCACCTAATGTTTTGGGAATTATGGATACTATCAATTTGTCGATCAGTGTTTTCATCAATAGGTCAATGTTTGTTAAGCATCATCATGTTTCTCTTAAGGATGCTACAAGTTCGACCGATGAATCAGTGTTTCATCCTCTTCCAGCCCTGTTTCGATTGCTTGGCCTGAGCCCTTTCAAGAAGGCAGAGTTAACTCCTGGTGATTTCTATTCCAACAAGCGTCCTTTCAGTCAAACGGTCACATCACTACATGCTAAGTCCGAGCGTCCTTCTCAAAATGGTCATGAGAATGAAAATGAGGATTCTATTTCTGAATTTGATCTTGACAACATTGTTGGTGTTGCATCAAGCTCAGAGTTAGAGGAAATGGACCCCCCTGAAAATCTTCTTTGTGAACTGCGATCATATCAAAAACAGGCTCTTCATTGGATGATTCAGATGGAGAAGGGACGGTCAAGGGACGAGACTACAACAACCCTTCATCCATGTTGGGAGGCATATCGCCTGGCTGACAAGAGAGAGCTTGTTGTTTATTTGAATGCATTTTCTGGTGAAGCGACAACGGAATTTCCTAGCACCCTAGAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGACTTGGAAAGACTGTAATGACCATATCCCTTCTCATTGCCCATTCAGGAAGGGGTGGATCATTAGGCAGTCAACCCATAACTCAGTCATTTGTTGAAGGCAGTGAAGTTGGTGATACTGGCACAAATCCCAATTTTTCAAACATTCCAAAGAAGGCAACCAAATTTACTGGTTTTGATAAACTGACAAAAAAAAACACTTCTTTATCAAGTGGTGGCAACTTGATAATTTGTCCCATGACTCTTCTTGGGCAGTGGAAGGCAGAGATTGAAACTCATGTGCACCCTGGGTCCCTGTCTCTATATGTTCATTACGGACAAAGTAGGCCCAAAGATGCAAAAAGTCTAGCTCAATGCGATGTTGTAATTACTACCTACGGAATTTTGGCCTCTGAATTTTCCAGTGAGAATGCAGAGAATAATGGTGGACTCTTCTCCATTCGTTGGTTCAGAGTGGTTCTTGACGAGGCACATACTATAAAATCTTCTAAAAGCCAAGTTTCTATGGCAGCTTCTGCTCTAATTGCTGACAATCGCTGGTGTCTTACTGGGACTCCAATCCAGAACAACCTTGAGGATGTTTACAGTCTTCTTCGCTTTCTTAGAATAGAACCTTGGGGTCATTGGGCCTGGTGGAACAAGCTTATTCAGAAACCATTTGAGGGTGGTGATGAGAAAGGATTGAAATTAGTTCAGTCCATTTTGAAGCCTATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCTATACTAGTTCTCCCTCCCGCCGATATGCAGATAATTTACTGTGATCCCACAGAAGCTGAAAAGGACTTCTATGAGGCCCTATTCAAAAGATCTAAGGTAAAGTTTGATAAGTTTGTTGAGCAAGGACGTGTTCTTCATAATTATGCTTCAATACTAGAGCTACTTTTACGTCTTCGGCAATGTTGTGACCATCCATTTCTCGTCATGAGTCGAGGTGATACTCAAGAATTTTCCGATCTAAGCAAACTAGCTAAGCGCTTCCTTAGAGGAACCGGTAATGCTTCAGAAGGTGAAGTGAAAGATGCGGTCTCACGAGCTTATGTTGAAGAAGTTGTGGAAGAGTTACGTAAGGGGGAGCAGGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTGTTGACACCATGTGCTCACCGCCTTTGCCGGGAATGCCTGTTGGCAAGTTGGCGAAATTCTAGCTCTGGCTTATGTCCTGTTTGTAGGAAAACAATAAGCAAGCAGGACCTTATCACTGCCCCTACTGAGAGTCGATTTCAGGTTGATATCGAGAAGAACTGGGTAGAGTCATGCAAGATAACTGGTCTTTTGAATGAACTTGAAAATCTTCGCTCGTCTGGATCTAAGAGCATTGTTTTTAGCCAGTGGACTGCATTTCTAGACCTCTTGCAGATTCCCTTTACTCGGAATAAAATATCATTTGTTCGACTTGATGGGACATTGAATTTGCAGCAGCGTGAAAAAGTAATCAAACAATTCTCAGAAGACAACGACATACAGGTGTTGTTGATGTCGCTAAAAGCTGGTGGAGTGGGCATAAATCTAACAGCAGCTTCCAATGCCTTTGTCATGGACCCATGGTGGAATCCAGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGGCTATCAAACGGTTTATTGTGAAGGGGACAGTTGAGCAGAGAATGGAGGCAGTGCAAGCACGCAAACAACGAATGATTTCTGGTGCCTTGACTGACCAGGAAGTTCGATCTGCACGGATTGAGGAGTTGAAGATGCTTTTTACATAG 3036 0.4374 MGSKVTDPNLSTVRSIVGSEFSDMDIIRALHMAKNDVTAAINIIFDTNTPKLKPTRTINKQRVSPPKSSPRAVTTSSKKSNADVENKKCSVASESDSESVDWWFVGSGEVAGLSTCKGRSLKSGDKVIFKFPVKKVSVSPSPGKGFGRAASCSEIVRFSNEQDWEIGRIPNEWARCLLPLVRDNKVRVEGKCEFAPNVLGIMDTINLSISVFINRSMFVKHHHVSLKDATSSTDESVFHPLPALFRLLGLSPFKKAELTPGDFYSNKRPFSQTVTSLHAKSERPSQNGHENENEDSISEFDLDNIVGVASSSELEEMDPPENLLCELRSYQKQALHWMIQMEKGRSRDETTTTLHPCWEAYRLADKRELVVYLNAFSGEATTEFPSTLEMARGGILADAMGLGKTVMTISLLIAHSGRGGSLGSQPITQSFVEGSEVGDTGTNPNFSNIPKKATKFTGFDKLTKKNTSLSSGGNLIICPMTLLGQWKAEIETHVHPGSLSLYVHYGQSRPKDAKSLAQCDVVITTYGILASEFSSENAENNGGLFSIRWFRVVLDEAHTIKSSKSQVSMAASALIADNRWCLTGTPIQNNLEDVYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDEKGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQIIYCDPTEAEKDFYEALFKRSKVKFDKFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFSDLSKLAKRFLRGTGNASEGEVKDAVSRAYVEEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSSSGLCPVCRKTISKQDLITAPTESRFQVDIEKNWVESCKITGLLNELENLRSSGSKSIVFSQWTAFLDLLQIPFTRNKISFVRLDGTLNLQQREKVIKQFSEDNDIQVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGTVEQRMEAVQARKQRMISGALTDQEVRSARIEELKMLFT 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03476 1011 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 739 838 IPR013083 -
Trre12g03476 1011 Gene3D - 384 432 IPR038718 -
Trre12g03476 1011 SMART HIRAN_2 105 213 IPR014905 GO:0003676|GO:0008270|GO:0016818
Trre12g03476 1011 SMART ring_2 776 815 IPR001841 -
Trre12g03476 1011 MobiDBLite consensus disorder prediction 274 296 - -
Trre12g03476 1011 ProSitePatterns Zinc finger RING-type signature. 791 800 IPR017907 -
Trre12g03476 1011 Gene3D - 453 643 IPR038718 -
Trre12g03476 1011 MobiDBLite consensus disorder prediction 53 83 - -
Trre12g03476 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 642 IPR027417 -
Trre12g03476 1011 CDD DEXDc_SHPRH-like 327 642 - -
Trre12g03476 1011 CDD SF2_C_SNF 842 969 - -
Trre12g03476 1011 SMART ultradead3 323 621 IPR014001 -
Trre12g03476 1011 SMART helicmild6 875 958 IPR001650 -
Trre12g03476 1011 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 846 1011 IPR001650 -
Trre12g03476 1011 Pfam SNF2-related domain 330 720 IPR000330 GO:0005524|GO:0140658
Trre12g03476 1011 Pfam Helicase conserved C-terminal domain 847 958 IPR001650 -
Trre12g03476 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 1005 IPR027417 -
Trre12g03476 1011 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 94 1011 - -
Trre12g03476 1011 Pfam HIRAN domain 106 209 IPR014905 GO:0003676|GO:0008270|GO:0016818
Trre12g03476 1011 CDD UBA_Cbl_like 9 47 - -
Trre12g03476 1011 ProSiteProfiles Zinc finger RING-type profile. 776 816 IPR001841 -
Trre12g03476 1011 Gene3D - 658 1011 IPR027417 -
Trre12g03476 1011 SUPERFAMILY RING/U-box 764 822 - -
Trre12g03476 1011 MobiDBLite consensus disorder prediction 53 80 - -
Trre12g03476 1011 Pfam Zinc finger, C3HC4 type (RING finger) 773 821 - -
Trre12g03476 1011 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 385 604 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03476 Trre-Chr12 50426049 50434779 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03476 1 1011 RAD5 or RAD16-like Gene Family AT5G22750 70.474 0.0 1465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre12g03476 SNF2_N 9.3e-88 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03476 K15505 - gmx:100794452 1702.57