Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03475 ATGGGGAGCAAGGTCACCGATCCCAATCTCTCCACCGTCCGATCCATCGTCGGTTCCGAATTCTCCGACATGGACATCATCAGAGCTCTACACATGGCCAAAAACGACGTCACTGCCGCCATTAACATCATCTTCGATACCAATACTCCTAAATTGAAACCAACACGCACAATCAATAAACAACGAGTTTCTCCTCCGAAATCATCTCCACGCGCCGTCACTACCAGCTCCAAGAAAAGCAACGCTGATGTAGAAAATAAGAAATGTTCCGTTGCGTCTGAGTCGGATTCAGAATCGGTTGATTGGTGGTTCGTTGGTTCTGGCGAAGTGGCAGGGCTGTCGACGTGTAAAGGAAGGAGTTTAAAGTCCGGTGATAAAGTGATTTTCAAGTTTCCAGTAAAAAAGGTTTCTGTTTCACCGTCTCCGGGTAAGGGTTTTGGTCGAGCAGCGAGTTGTTCCGAGATTGTTCGATTTTCGAATGAACAAGATTGGGAGATTGGCAGAATACCGAATGAATGGGCTCGATGTTTGTTGCCGCTGGTGCGGGATAATAAGGTTAGAGTTGAAGGGAAATGTGAATTTGCACCTAATGTTTTGGGAATTATGGATACTATCAATTTGTCGATCAGTGTTTTCATCAATAGGTCAATGTTTGTTAAGCATCATCATGTTTCTCTTAAGGATGCTACAAGTTCGACCGATGAATCAGTGTTTCATCCTCTTCCAGCCCTGTTTCGATTGCTTGGCCTGAGCCCTTTCAAGAAGGCAGAGTTAACTCCTGGTGATTTCTATTCCAACAAGCGTCCTTTCAGTCAAACGAAGGGGTTTTCTCTTCAGGTCACATCACTACATGCTAAGTCCGAGCGTCCTTCTCAAAATGGTCATGAGAATGAAAATGAGGATTCTATTTCTGAATTTGATCTTGACAACATTGTTGGTGTTGCATCAAGCTCAGAGTTAGAGGAAATGGACCCCCCTGAAAATCTTCTTTGTGAACTGCGATCATATCAAAAACAGGCTCTTCATTGGATGATTCAGATGGAGAAGGGACGGTCAAGGGACGAGACTACAACAACCCTTCATCCATGTTGGGAGGCATATCGCCTGGCTGACAAGAGAGAGCTTGTTGTTTATTTGAATGCATTTTCTGGTGAAGCGACAACGGAATTTCCTAGCACCCTAGAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGACTTGGAAAGACTGTAATGACCATATCCCTTCTCATTGCCCATTCAGGAAGGGGTGGATCATTAGGCAGTCAACCCATAACTCAGTCATTTGTTGAAGGCAGTGAAGTTGGTGATACTGGCACAAATCCCAATTTTTCAAACATTCCAAAGAAGGCAACCAAATTTACTGGTTTTGATAAACTGACAAAAAAAAACACTTCTTTATCAAGTGGTGGCAACTTGATAATTTGTCCCATGACTCTTCTTGGGCAGTGGAAGGCAGAGATTGAAACTCATGTGCACCCTGGGTCCCTGTCTCTATATGTTCATTACGGACAAAGTAGGCCCAAAGATGCAAAAAGTCTAGCTCAATGCGATGTTGTAATTACTACCTACGGAATTTTGGCCTCTGAATTTTCCAGTGAGAATGCAGAGAATAATGGTGGACTCTTCTCCATTCGTTGGTTCAGAGTGGTTCTTGACGAGGCACATACTATAAAATCTTCTAAAAGCCAAGTTTCTATGGCAGCTTCTGCTCTAATTGCTGACAATCGCTGGTGTCTTACTGGGACTCCAATCCAGAACAACCTTGAGGATGTTTACAGTCTTCTTCGCTTTCTTAGAATAGAACCTTGGGGTCATTGGGCCTGGTGGAACAAGCTTATTCAGAAACCATTTGAGGGTGGTGATGAGAAAGGATTGAAATTAGTTCAGTCCATTTTGAAGCCTATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCTATACTAGTTCTCCCTCCCGCCGATATGCAGATAATTTACTGTGATCCCACAGAAGCTGAAAAGGACTTCTATGAGGCCCTATTCAAAAGATCTAAGGTAAAGTTTGATAAGTTTGTTGAGCAAGGACGTGTTCTTCATAATTATGCTTCAATACTAGAGCTACTTTTACGTCTTCGGCAATGTTGTGACCATCCATTTCTCGTCATGAGTCGAGGTGATACTCAAGAATTTTCCGATCTAAGCAAACTAGCTAAGCGCTTCCTTAGAGGAACCGGTAATGCTTCAGAAGGTGAAGTGAAAGATGCGGTCTCACGAGCTTATGTTGAAGAAGTTGTGGAAGAGTTACGTAAGGGGGAGCAGGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTGTTGACACCATGTGCTCACCGCCTTTGCCGGGAATGCCTGTTGGCAAGTTGGCGAAATTCTAGCTCTGGCTTATGTCCTGTTTGTAGGAAAACAATAAGCAAGCAGGACCTTATCACTGCCCCTACTGAGAGTCGATTTCAGGTTGATATCGAGAAGAACTGGGTAGAGTCATGCAAGATAACTGGTCTTTTGAATGAACTTGAAAATCTTCGCTCGTCTGGATCTAAGAGCATTGTTTTTAGCCAGTGGACTGCATTTCTAGACCTCTTGCAGATTCCCTTTACTCGGAATAAAATATCATTTGTTCGACTTGATGGGACATTGAATTTGCAGCAGCGTGAAAAAGTAATCAAACAATTCTCAGAAGACAACGACATACAGGTGTTGTTGATGTCGCTAAAAGCTGGTGGAGTGGGCATAAATCTAACAGCAGCTTCCAATGCCTTTGTCATGGACCCATGGTGGAATCCAGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGGCTATCAAACGGTTTATTGTGAAGGGGACAGTTGAGCAGAGAATGGAGGCAGTGCAAGCACGCAAACAACGAATGATTTCTGGTGCCTTGACTGACCAGGAAGTTCGATCTGCACGGATTGAGGAGTTGAAGATGCTTTTTACATAG 3054 0.4375 MGSKVTDPNLSTVRSIVGSEFSDMDIIRALHMAKNDVTAAINIIFDTNTPKLKPTRTINKQRVSPPKSSPRAVTTSSKKSNADVENKKCSVASESDSESVDWWFVGSGEVAGLSTCKGRSLKSGDKVIFKFPVKKVSVSPSPGKGFGRAASCSEIVRFSNEQDWEIGRIPNEWARCLLPLVRDNKVRVEGKCEFAPNVLGIMDTINLSISVFINRSMFVKHHHVSLKDATSSTDESVFHPLPALFRLLGLSPFKKAELTPGDFYSNKRPFSQTKGFSLQVTSLHAKSERPSQNGHENENEDSISEFDLDNIVGVASSSELEEMDPPENLLCELRSYQKQALHWMIQMEKGRSRDETTTTLHPCWEAYRLADKRELVVYLNAFSGEATTEFPSTLEMARGGILADAMGLGKTVMTISLLIAHSGRGGSLGSQPITQSFVEGSEVGDTGTNPNFSNIPKKATKFTGFDKLTKKNTSLSSGGNLIICPMTLLGQWKAEIETHVHPGSLSLYVHYGQSRPKDAKSLAQCDVVITTYGILASEFSSENAENNGGLFSIRWFRVVLDEAHTIKSSKSQVSMAASALIADNRWCLTGTPIQNNLEDVYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDEKGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQIIYCDPTEAEKDFYEALFKRSKVKFDKFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFSDLSKLAKRFLRGTGNASEGEVKDAVSRAYVEEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSSSGLCPVCRKTISKQDLITAPTESRFQVDIEKNWVESCKITGLLNELENLRSSGSKSIVFSQWTAFLDLLQIPFTRNKISFVRLDGTLNLQQREKVIKQFSEDNDIQVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGTVEQRMEAVQARKQRMISGALTDQEVRSARIEELKMLFT 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03475 1017 ProSitePatterns Zinc finger RING-type signature. 797 806 IPR017907 -
Trre12g03475 1017 SMART ultradead3 329 627 IPR014001 -
Trre12g03475 1017 CDD SF2_C_SNF 848 975 - -
Trre12g03475 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 660 1011 IPR027417 -
Trre12g03475 1017 SMART HIRAN_2 105 213 IPR014905 GO:0003676|GO:0008270|GO:0016818
Trre12g03475 1017 ProSiteProfiles Zinc finger RING-type profile. 782 822 IPR001841 -
Trre12g03475 1017 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 94 1017 - -
Trre12g03475 1017 Pfam Zinc finger, C3HC4 type (RING finger) 779 827 - -
Trre12g03475 1017 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 391 610 IPR014001 -
Trre12g03475 1017 MobiDBLite consensus disorder prediction 53 83 - -
Trre12g03475 1017 MobiDBLite consensus disorder prediction 282 302 - -
Trre12g03475 1017 Gene3D - 390 438 IPR038718 -
Trre12g03475 1017 Gene3D - 459 649 IPR038718 -
Trre12g03475 1017 Pfam SNF2-related domain 336 726 IPR000330 GO:0005524|GO:0140658
Trre12g03475 1017 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 745 844 IPR013083 -
Trre12g03475 1017 Pfam HIRAN domain 106 209 IPR014905 GO:0003676|GO:0008270|GO:0016818
Trre12g03475 1017 CDD DEXDc_SHPRH-like 333 648 - -
Trre12g03475 1017 SUPERFAMILY RING/U-box 770 828 - -
Trre12g03475 1017 SMART helicmild6 881 964 IPR001650 -
Trre12g03475 1017 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 852 1017 IPR001650 -
Trre12g03475 1017 CDD UBA_Cbl_like 9 47 - -
Trre12g03475 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 648 IPR027417 -
Trre12g03475 1017 SMART ring_2 782 821 IPR001841 -
Trre12g03475 1017 Pfam Helicase conserved C-terminal domain 853 964 IPR001650 -
Trre12g03475 1017 MobiDBLite consensus disorder prediction 53 80 - -
Trre12g03475 1017 Gene3D - 664 1017 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03475 Trre-Chr12 50426049 50434779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03475 1 1017 RAD5 or RAD16-like Gene Family AT5G22750 70.378 0.0 1471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre12g03475 SNF2_N 9.4e-88 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03475 K15505 - gmx:100794452 1696.79