Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre12g03475 | ATGGGGAGCAAGGTCACCGATCCCAATCTCTCCACCGTCCGATCCATCGTCGGTTCCGAATTCTCCGACATGGACATCATCAGAGCTCTACACATGGCCAAAAACGACGTCACTGCCGCCATTAACATCATCTTCGATACCAATACTCCTAAATTGAAACCAACACGCACAATCAATAAACAACGAGTTTCTCCTCCGAAATCATCTCCACGCGCCGTCACTACCAGCTCCAAGAAAAGCAACGCTGATGTAGAAAATAAGAAATGTTCCGTTGCGTCTGAGTCGGATTCAGAATCGGTTGATTGGTGGTTCGTTGGTTCTGGCGAAGTGGCAGGGCTGTCGACGTGTAAAGGAAGGAGTTTAAAGTCCGGTGATAAAGTGATTTTCAAGTTTCCAGTAAAAAAGGTTTCTGTTTCACCGTCTCCGGGTAAGGGTTTTGGTCGAGCAGCGAGTTGTTCCGAGATTGTTCGATTTTCGAATGAACAAGATTGGGAGATTGGCAGAATACCGAATGAATGGGCTCGATGTTTGTTGCCGCTGGTGCGGGATAATAAGGTTAGAGTTGAAGGGAAATGTGAATTTGCACCTAATGTTTTGGGAATTATGGATACTATCAATTTGTCGATCAGTGTTTTCATCAATAGGTCAATGTTTGTTAAGCATCATCATGTTTCTCTTAAGGATGCTACAAGTTCGACCGATGAATCAGTGTTTCATCCTCTTCCAGCCCTGTTTCGATTGCTTGGCCTGAGCCCTTTCAAGAAGGCAGAGTTAACTCCTGGTGATTTCTATTCCAACAAGCGTCCTTTCAGTCAAACGAAGGGGTTTTCTCTTCAGGTCACATCACTACATGCTAAGTCCGAGCGTCCTTCTCAAAATGGTCATGAGAATGAAAATGAGGATTCTATTTCTGAATTTGATCTTGACAACATTGTTGGTGTTGCATCAAGCTCAGAGTTAGAGGAAATGGACCCCCCTGAAAATCTTCTTTGTGAACTGCGATCATATCAAAAACAGGCTCTTCATTGGATGATTCAGATGGAGAAGGGACGGTCAAGGGACGAGACTACAACAACCCTTCATCCATGTTGGGAGGCATATCGCCTGGCTGACAAGAGAGAGCTTGTTGTTTATTTGAATGCATTTTCTGGTGAAGCGACAACGGAATTTCCTAGCACCCTAGAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGACTTGGAAAGACTGTAATGACCATATCCCTTCTCATTGCCCATTCAGGAAGGGGTGGATCATTAGGCAGTCAACCCATAACTCAGTCATTTGTTGAAGGCAGTGAAGTTGGTGATACTGGCACAAATCCCAATTTTTCAAACATTCCAAAGAAGGCAACCAAATTTACTGGTTTTGATAAACTGACAAAAAAAAACACTTCTTTATCAAGTGGTGGCAACTTGATAATTTGTCCCATGACTCTTCTTGGGCAGTGGAAGGCAGAGATTGAAACTCATGTGCACCCTGGGTCCCTGTCTCTATATGTTCATTACGGACAAAGTAGGCCCAAAGATGCAAAAAGTCTAGCTCAATGCGATGTTGTAATTACTACCTACGGAATTTTGGCCTCTGAATTTTCCAGTGAGAATGCAGAGAATAATGGTGGACTCTTCTCCATTCGTTGGTTCAGAGTGGTTCTTGACGAGGCACATACTATAAAATCTTCTAAAAGCCAAGTTTCTATGGCAGCTTCTGCTCTAATTGCTGACAATCGCTGGTGTCTTACTGGGACTCCAATCCAGAACAACCTTGAGGATGTTTACAGTCTTCTTCGCTTTCTTAGAATAGAACCTTGGGGTCATTGGGCCTGGTGGAACAAGCTTATTCAGAAACCATTTGAGGGTGGTGATGAGAAAGGATTGAAATTAGTTCAGTCCATTTTGAAGCCTATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCTATACTAGTTCTCCCTCCCGCCGATATGCAGATAATTTACTGTGATCCCACAGAAGCTGAAAAGGACTTCTATGAGGCCCTATTCAAAAGATCTAAGGTAAAGTTTGATAAGTTTGTTGAGCAAGGACGTGTTCTTCATAATTATGCTTCAATACTAGAGCTACTTTTACGTCTTCGGCAATGTTGTGACCATCCATTTCTCGTCATGAGTCGAGGTGATACTCAAGAATTTTCCGATCTAAGCAAACTAGCTAAGCGCTTCCTTAGAGGAACCGGTAATGCTTCAGAAGGTGAAGTGAAAGATGCGGTCTCACGAGCTTATGTTGAAGAAGTTGTGGAAGAGTTACGTAAGGGGGAGCAGGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTGTTGACACCATGTGCTCACCGCCTTTGCCGGGAATGCCTGTTGGCAAGTTGGCGAAATTCTAGCTCTGGCTTATGTCCTGTTTGTAGGAAAACAATAAGCAAGCAGGACCTTATCACTGCCCCTACTGAGAGTCGATTTCAGGTTGATATCGAGAAGAACTGGGTAGAGTCATGCAAGATAACTGGTCTTTTGAATGAACTTGAAAATCTTCGCTCGTCTGGATCTAAGAGCATTGTTTTTAGCCAGTGGACTGCATTTCTAGACCTCTTGCAGATTCCCTTTACTCGGAATAAAATATCATTTGTTCGACTTGATGGGACATTGAATTTGCAGCAGCGTGAAAAAGTAATCAAACAATTCTCAGAAGACAACGACATACAGGTGTTGTTGATGTCGCTAAAAGCTGGTGGAGTGGGCATAAATCTAACAGCAGCTTCCAATGCCTTTGTCATGGACCCATGGTGGAATCCAGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGGCTATCAAACGGTTTATTGTGAAGGGGACAGTTGAGCAGAGAATGGAGGCAGTGCAAGCACGCAAACAACGAATGATTTCTGGTGCCTTGACTGACCAGGAAGTTCGATCTGCACGGATTGAGGAGTTGAAGATGCTTTTTACATAG | 3054 | 0.4375 | MGSKVTDPNLSTVRSIVGSEFSDMDIIRALHMAKNDVTAAINIIFDTNTPKLKPTRTINKQRVSPPKSSPRAVTTSSKKSNADVENKKCSVASESDSESVDWWFVGSGEVAGLSTCKGRSLKSGDKVIFKFPVKKVSVSPSPGKGFGRAASCSEIVRFSNEQDWEIGRIPNEWARCLLPLVRDNKVRVEGKCEFAPNVLGIMDTINLSISVFINRSMFVKHHHVSLKDATSSTDESVFHPLPALFRLLGLSPFKKAELTPGDFYSNKRPFSQTKGFSLQVTSLHAKSERPSQNGHENENEDSISEFDLDNIVGVASSSELEEMDPPENLLCELRSYQKQALHWMIQMEKGRSRDETTTTLHPCWEAYRLADKRELVVYLNAFSGEATTEFPSTLEMARGGILADAMGLGKTVMTISLLIAHSGRGGSLGSQPITQSFVEGSEVGDTGTNPNFSNIPKKATKFTGFDKLTKKNTSLSSGGNLIICPMTLLGQWKAEIETHVHPGSLSLYVHYGQSRPKDAKSLAQCDVVITTYGILASEFSSENAENNGGLFSIRWFRVVLDEAHTIKSSKSQVSMAASALIADNRWCLTGTPIQNNLEDVYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDEKGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQIIYCDPTEAEKDFYEALFKRSKVKFDKFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFSDLSKLAKRFLRGTGNASEGEVKDAVSRAYVEEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSSSGLCPVCRKTISKQDLITAPTESRFQVDIEKNWVESCKITGLLNELENLRSSGSKSIVFSQWTAFLDLLQIPFTRNKISFVRLDGTLNLQQREKVIKQFSEDNDIQVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGTVEQRMEAVQARKQRMISGALTDQEVRSARIEELKMLFT | 1017 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre12g03475 | 1017 | ProSitePatterns | Zinc finger RING-type signature. | 797 | 806 | IPR017907 | - | |
Trre12g03475 | 1017 | SMART | ultradead3 | 329 | 627 | IPR014001 | - | |
Trre12g03475 | 1017 | CDD | SF2_C_SNF | 848 | 975 | - | - | |
Trre12g03475 | 1017 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 660 | 1011 | IPR027417 | - | |
Trre12g03475 | 1017 | SMART | HIRAN_2 | 105 | 213 | IPR014905 | GO:0003676|GO:0008270|GO:0016818 | |
Trre12g03475 | 1017 | ProSiteProfiles | Zinc finger RING-type profile. | 782 | 822 | IPR001841 | - | |
Trre12g03475 | 1017 | PANTHER | TRANSCRIPTION TERMINATION FACTOR 2-RELATED | 94 | 1017 | - | - | |
Trre12g03475 | 1017 | Pfam | Zinc finger, C3HC4 type (RING finger) | 779 | 827 | - | - | |
Trre12g03475 | 1017 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 391 | 610 | IPR014001 | - | |
Trre12g03475 | 1017 | MobiDBLite | consensus disorder prediction | 53 | 83 | - | - | |
Trre12g03475 | 1017 | MobiDBLite | consensus disorder prediction | 282 | 302 | - | - | |
Trre12g03475 | 1017 | Gene3D | - | 390 | 438 | IPR038718 | - | |
Trre12g03475 | 1017 | Gene3D | - | 459 | 649 | IPR038718 | - | |
Trre12g03475 | 1017 | Pfam | SNF2-related domain | 336 | 726 | IPR000330 | GO:0005524|GO:0140658 | |
Trre12g03475 | 1017 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 745 | 844 | IPR013083 | - | |
Trre12g03475 | 1017 | Pfam | HIRAN domain | 106 | 209 | IPR014905 | GO:0003676|GO:0008270|GO:0016818 | |
Trre12g03475 | 1017 | CDD | DEXDc_SHPRH-like | 333 | 648 | - | - | |
Trre12g03475 | 1017 | SUPERFAMILY | RING/U-box | 770 | 828 | - | - | |
Trre12g03475 | 1017 | SMART | helicmild6 | 881 | 964 | IPR001650 | - | |
Trre12g03475 | 1017 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 852 | 1017 | IPR001650 | - | |
Trre12g03475 | 1017 | CDD | UBA_Cbl_like | 9 | 47 | - | - | |
Trre12g03475 | 1017 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 318 | 648 | IPR027417 | - | |
Trre12g03475 | 1017 | SMART | ring_2 | 782 | 821 | IPR001841 | - | |
Trre12g03475 | 1017 | Pfam | Helicase conserved C-terminal domain | 853 | 964 | IPR001650 | - | |
Trre12g03475 | 1017 | MobiDBLite | consensus disorder prediction | 53 | 80 | - | - | |
Trre12g03475 | 1017 | Gene3D | - | 664 | 1017 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre12g03475 | Trre-Chr12 | 50426049 | 50434779 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre12g03475 | 1 | 1017 | RAD5 or RAD16-like Gene Family | AT5G22750 | 70.378 | 0.0 | 1471 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Trre12g03475 | SNF2_N | 9.4e-88 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre12g03475 | K15505 | - | gmx:100794452 | 1696.79 |