Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03473 ATGAAGCTTCTTCAGAAATCCAAATCGACGGAACCACAATCTGTATCGAAACGGAGAGGTAGACCAAGAAAACAGAGAAGAAAACTGAGTGAAACTGTAACCGATGAATCCAAGAGGATTTCATTGATCGGACGATTTGTTTCGAAAGAGTTTTCGAATAGTGTTTCTCGAATAGGAAAAGTTGTTCATTATAAAATTGGATTCTATACAGTGGAATATGAAGAAGGAATTTGTGAGCATTTAGTTAGTGGTGACATTAGGAAAATTCTTATGGATGATTGTGATTTAGACAATGATTTGATTCGACGAAAAAATGAATTGGATGAAGCGTTGTTGAGAAAGAGAAAGATCGTCGATGAATCGGACAAGAAATCGAGCGAATTGAATGTGGAAGAGGAAGAGAAGAATTCGAGCGAATTGAATGTGGAAAAGGACGAGGAAATGCGAGATTTAACTGATGCTGATTTGATTTCGGATGTTGAGACAGCTGTTGAATCGTGGCCGCAGTTAGAGTTGCCACCGGAGTTGATGCTACCACATTCTTCAGGAACTATTGGTGTTCCTGATAGTTGTGTCCATAATTTGTTTTCAGTTTATTCATTTCTGCGATCGTTTAGTGCACGGTTATTTGTGAGTCCGTTTACTTTGGACGAATTTGTTGGCGCGCTTAACTGTGGAGTTCCGAATACACTGATTGATGCTGTACATAATGCTTTGATGCGTGCTTTGAGACGTCATCTGGAAAAAATTTCATCTGAGGACTCAAAGATAGCCTCAAGATGTTCAACTGAGGGCTCAAAGATAGCCTCAAGATGTCTTAGGTACAGTGAATGGAGCTTGCTTGATACATTGACTTGGCCTGTTTTCTTAATTCAATATTTAGCAGTTAATGGATGCACTAAGGGTTCTGAGTGGAAAGGATTTTATGACGAGATTTTTCATGGCGAGTATTATTCATTGCCTGCAAGTAGGAAGTTACAAATATTACAAATTCTCTGCGACGATGTTTTGGAGTTCGAGGAGCTAAGAACTGAAATGCACATGCGTGGAGAATCAGAGGCCGGGAAGAATTATGATGCTGAGGATATTCCTCATGCAGAAAAGGGACCGAAAAGCGTCCTCCATCGACGAAATGCCAAAACTGCTGATTGCCAGGATAAAGAATCTATGAAGTTTGTTTCAAAATCAGATGCTGTGAACTTACCTGGTATTTCTGAGGATGAGGTTGACAAAAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCTGCTGTTTATCATTCAAGGTGTATCGGTGTGATGAAGATGTATATATCAGATGGGGAATGGCATTGTCCAGAATGCAAAATAAATACAATTGGGCCAACAATTGCACGGGGAACATCTCTTAGGGGGGCTGAAATGTTTGGAAATGATTTGTACGGGCAATTTTTCATCGGTACTTGTGACCACTTACTTGTGCTCAGTGGCAACAACGGGGAAGTTTGTTGTAAATACTACAATCAGAATGACATTCCTGAAGTTATCCGAGTGCTTTGTGCTTCCATTCAACATAGACCTGTATACTCTGGTATTTGCATGGCGATGTTACAATATTGGAATATTTCAGAAAGCTTCCAACACCTTTGTGTTCCAAATGGAACACATCTAAACTCAGAAAATTCAAAGATAGATGAAAATATCTCTGCTGCATTACTTCCTCATGTGGTTGAAAATGACCATAAAGGTTTGGGGAAAGCAGAGTATGGTCCAACATCTGTGAATGGGTTCTGTAGTGATAATATGGCCCCATCTCTTGATGCATCATCATTGGTTACCAGTAGTCCCACTCGTGAAACCAATGGCAATGCTAACAAGTCATCTGCAGATATTCCTGCCAAGTGCACCTTGGTAAGCTATCCATTTATTAATTGCGGGCAAACTAAAGGTGACTTATCTGGTTCTGGAAAGTCTAATGATTTTGTGTATAGGGGTTGTTCCTATAAACCACAAGCATATGTTAATAACTATATGCATGGCGATTTTGCGGCATCTGCTGCTGCTAACATTGCCGTTCTTTATTCAGAGAATTCTAGACCAGAGAAAGCTCCATCTGAATACACTAACCTGTTCGCAAAAGCATTTTCACTAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGACAAGAAGCCTGCGGAGGTTATAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGGCTCTGGTCCAAGCAAGAAAGTATGTATGTTAAATCATGCTGCTATATGTGCTACCAAAAGCGCCATGAAAATCCTTTCTGGTCTTGCTCCTGTAAGGAGTGTAGAAGGAATTAGCCCTACAATTGCAACCTATGTCATATATATGGAGGAAAGCTTATGTGGTTTAATAGATGGGCCCTTTCTTAGCAGAAACTATAGAAAGCAATGGCGTGAACAAGTGGAAAGGGCCACATCATTTAGTAACATAAAGCCCCTTTTACTTAATCTTGAGGAGAACATCCGCCCAATTGCTTTTTGTGGCGACTGGGTGAAGCTTGTGGATGAGTGGTTGGTTGAATCTCCTACAATCCAAAGTGCATCATCTACTCTTGGAACAACACAGGAACGTGCACCATGCGATAGATGTAGAAAATTACCTATCAAATATCCATTTGACACTTCCCCTGAAAACTTTGGCTGGTGGAATGGCAAATTTACCAAATCTGTATTTCAGAAAGCTGCATTGCCAAAATTTATGGTCAGAAAAGCAGCTCGGCAAGGTGGTTTGAGGAAAATTTTGGGCATTGTCTATCCTGAAGTCTCTGTAATTCCTAAAAGAAGCCGTCAGCTGTTTTGGAGAGCTGCCGTTGAGATGAGTAGGAATGCATCACAGCTCGCACTTCAGGTCCGATATCTAGATTTTCATATCAGATGGATTGATCTGATTCGGCCGGAGTATAACCTCCAGGATGGAAAAGGTCAAGATACTGAAGTTTCTGCTTTCAGAAATGCAATTATTTGTGACAAAAAGTTTGCACATGGCAAAACATCCTATGGCATAGATTTTGGGAGCCAAAAGCATATTTCCTCTCGGATAATGAAGAATGCTGAAACAATAGACGAAGGGCCAGATGGAAAGAAGTATTGGTTTTCTGAAACATGCATTCCTTTATATTTGGTAAAAGAGTATGAAGCAAGAAACAAAAAGGAGCCATCTCATAAAGATAACTTGAATGTTGCATCTCGATGTCACAAAAGGCGGTTGAGTGCTATCTGCAAGGACATATTTTTTTACCTCACTTGCAAGAGAGACAAAACAGACATGTTACCATGTTCTGTATGTACTCAGGATGTTTTATATAGGAATGCTCTCAAGTGTAGTGCATGTCAAGGTTATTGCCACGAGGGCTGTTCGATAAATTCAACATTCTCTACATATAAAGATGTTGAGTTCTTGATCACATGCAAACAATGTTATCATACCAGATTACTTTCTCAGAAAGAGACCAGTAACAAATCTTCAACCACTCCCTTACTGTTAAAAGGAAGAGAACATGGCTTTTCGACAATTTTCAAGAAACCAGAGCCTAGATATGATGATCAAATACCGAGATCTACCAGGGTAAAGGATTGTTGTCCTGACATGAAAAAAGTTGCTTCCCAGACCCCTCTGGAAACCAAAAGCAGTAGCAGAAAATCCTCTTGGGGTATTATATGGAAAAAGAATAATAGTGAAGACACAGGCATTAATTTCAGGCTAAAAAAGATAATTATGAAGCGATCCCGTTCAAGCTTGCCTCAATTGGAACCTGTTTGTCACTTATGCCATAAGCCATATAACCCTGATCTAATGTATATAGGCTGTGAAACATGTATCCGGTGGTATCATGCTGAAGCTCTTGAACTTGAAGAGTCCAAAATATTTTCTATGCTGGGCTTCAAATGTTGCAGGTGTCGCAAGATAAAGTCACCTGTATGTCCTTACTCTGATTCGGTGTGCAAGGAGCAAGTTGGAGAGAAGTCACACTCACGGGCTTCTAAGAGAAAAATTTCTGGAGCAGATTTTTCCGGTCCTGGAACACTTTCTGAAACAAGAGCAAGGGAGCCGGCTACTCCTATCTTTCCTGCAGAAGATGTTTCTATACATGAGAACAGTCCTATGCCGTTTTCTCTGTCAAATGTTGAACTGATTACAGAACCCATGCCAGAGTTAGATGCAGGCATTGAGTGTAACGTCGTCTCTGGGTCAGAGCTTCAGAAAATACCTGAGGAGGAAAGTAATGGAACTTTTGGGGGTGAAGTTCGGCATGCTGAAATTGCAACACAGGATGAAATGGATAATTTGCCTGCAGAGGTTTTACGACCTTTTGTAGAACTTGACTCTATGTTCTCTGACTGCGATCTTCTCAATGACTCTGAAACTTTAGATAATGAATACATGGAGTTTGAATCCCAAACTGATTTCTCCATGTCTGAACTTCTGCACCTAGATGATAACAGTCAATTTGTGGAAGCTGATGTGTCCACGGACTTGACAGAATTTGCAAAAGATTCTTTTACACTAGGTGTTCCCGAAGAATGTGCAACTACTAGTTTACAGAACAACCAGGAACCTACAATTTCATCACATCGAAATGTTCATAATTGTTCGCAATGTTCACAAATGGTACCAGTCCCCGATCTCTCTTGTCAGATTTGTAAGATGTGGATTCACAGCAAGTGTTCACCCTGGATTGAATCACCATCTAGGCTTGGATATTGGAGGTGTGGTAATTGCAGGGAATGGCAATAA 4797 0.4059 MKLLQKSKSTEPQSVSKRRGRPRKQRRKLSETVTDESKRISLIGRFVSKEFSNSVSRIGKVVHYKIGFYTVEYEEGICEHLVSGDIRKILMDDCDLDNDLIRRKNELDEALLRKRKIVDESDKKSSELNVEEEEKNSSELNVEKDEEMRDLTDADLISDVETAVESWPQLELPPELMLPHSSGTIGVPDSCVHNLFSVYSFLRSFSARLFVSPFTLDEFVGALNCGVPNTLIDAVHNALMRALRRHLEKISSEDSKIASRCSTEGSKIASRCLRYSEWSLLDTLTWPVFLIQYLAVNGCTKGSEWKGFYDEIFHGEYYSLPASRKLQILQILCDDVLEFEELRTEMHMRGESEAGKNYDAEDIPHAEKGPKSVLHRRNAKTADCQDKESMKFVSKSDAVNLPGISEDEVDKNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMYISDGEWHCPECKINTIGPTIARGTSLRGAEMFGNDLYGQFFIGTCDHLLVLSGNNGEVCCKYYNQNDIPEVIRVLCASIQHRPVYSGICMAMLQYWNISESFQHLCVPNGTHLNSENSKIDENISAALLPHVVENDHKGLGKAEYGPTSVNGFCSDNMAPSLDASSLVTSSPTRETNGNANKSSADIPAKCTLVSYPFINCGQTKGDLSGSGKSNDFVYRGCSYKPQAYVNNYMHGDFAASAAANIAVLYSENSRPEKAPSEYTNLFAKAFSLTASRFFWPSSDKKPAEVIRERCGWCLSCKGSGPSKKVCMLNHAAICATKSAMKILSGLAPVRSVEGISPTIATYVIYMEESLCGLIDGPFLSRNYRKQWREQVERATSFSNIKPLLLNLEENIRPIAFCGDWVKLVDEWLVESPTIQSASSTLGTTQERAPCDRCRKLPIKYPFDTSPENFGWWNGKFTKSVFQKAALPKFMVRKAARQGGLRKILGIVYPEVSVIPKRSRQLFWRAAVEMSRNASQLALQVRYLDFHIRWIDLIRPEYNLQDGKGQDTEVSAFRNAIICDKKFAHGKTSYGIDFGSQKHISSRIMKNAETIDEGPDGKKYWFSETCIPLYLVKEYEARNKKEPSHKDNLNVASRCHKRRLSAICKDIFFYLTCKRDKTDMLPCSVCTQDVLYRNALKCSACQGYCHEGCSINSTFSTYKDVEFLITCKQCYHTRLLSQKETSNKSSTTPLLLKGREHGFSTIFKKPEPRYDDQIPRSTRVKDCCPDMKKVASQTPLETKSSSRKSSWGIIWKKNNSEDTGINFRLKKIIMKRSRSSLPQLEPVCHLCHKPYNPDLMYIGCETCIRWYHAEALELEESKIFSMLGFKCCRCRKIKSPVCPYSDSVCKEQVGEKSHSRASKRKISGADFSGPGTLSETRAREPATPIFPAEDVSIHENSPMPFSLSNVELITEPMPELDAGIECNVVSGSELQKIPEEESNGTFGGEVRHAEIATQDEMDNLPAEVLRPFVELDSMFSDCDLLNDSETLDNEYMEFESQTDFSMSELLHLDDNSQFVEADVSTDLTEFAKDSFTLGVPEECATTSLQNNQEPTISSHRNVHNCSQCSQMVPVPDLSCQICKMWIHSKCSPWIESPSRLGYWRCGNCREWQ 1598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03473 1598 MobiDBLite consensus disorder prediction 1345 1372 - -
Trre12g03473 1598 MobiDBLite consensus disorder prediction 610 630 - -
Trre12g03473 1598 SUPERFAMILY Cysteine-rich domain 1546 1581 IPR046349 -
Trre12g03473 1598 ProSiteProfiles Zinc finger PHD-type profile. 413 460 IPR019787 -
Trre12g03473 1598 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1269 1327 IPR013083 -
Trre12g03473 1598 Coils Coil 123 150 - -
Trre12g03473 1598 PANTHER PHD FINGER FAMILY PROTEIN 38 1561 - -
Trre12g03473 1598 MobiDBLite consensus disorder prediction 1 31 - -
Trre12g03473 1598 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 483 IPR013083 -
Trre12g03473 1598 MobiDBLite consensus disorder prediction 123 146 - -
Trre12g03473 1598 Pfam DDT domain 190 246 IPR018501 -
Trre12g03473 1598 SMART PHD_3 415 458 IPR001965 -
Trre12g03473 1598 SMART PHD_3 1112 1161 IPR001965 -
Trre12g03473 1598 SMART PHD_3 1273 1321 IPR001965 -
Trre12g03473 1598 SMART PHD_3 1550 1595 IPR001965 -
Trre12g03473 1598 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 304 346 IPR028942 -
Trre12g03473 1598 ProSitePatterns Zinc finger PHD-type signature. 416 457 IPR019786 -
Trre12g03473 1598 SMART testlast3 189 249 IPR018501 -
Trre12g03473 1598 SUPERFAMILY FYVE/PHD zinc finger 1270 1327 IPR011011 -
Trre12g03473 1598 SUPERFAMILY FYVE/PHD zinc finger 408 464 IPR011011 -
Trre12g03473 1598 ProSiteProfiles DDT domain profile. 189 249 IPR018501 -
Trre12g03473 1598 MobiDBLite consensus disorder prediction 350 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03473 Trre-Chr12 50405748 50412744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03473 40 1598 PHD Transcription Factor Family AT5G35210 40.385 0.0 1030
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Trre12g03473 DDT 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03473 - - mtr:25487492 1920.21