Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03466 ATGGCTTTAACTTTAACTTCTCCACACTTTCGTTTTCAATCTTTCCTCACACGCACAAACTACGTCTTCTTCTCCGACCTTACCGAACATCAAGTCCACGATTCTCTCACTCTTCTTCGCCGGAGTAAGATCTCTGTTAATTCACCGCCGTCGCTGAAGCCAGTGAAATGCAGTAGATCCACCGAGGAGAAGAAGTGGAACGACGCAGAAACTGTTGCATCGGATTCCGATGATGTTGTGGATGATTCAAATGGTCAAGCTCCGACCAGAATTTCTTCAATTGAGCCTCAGAGGATTTCAACTACCTCTTCCGGCGATTCTCTTTCTCTCGGAATTCGAGAACCTGTTTATGAAGTAGTAGAAGTGAAATCTGATGGAACAGTATCGACTAGAAAAATCAACAGGAAACAATTATTGAAGTCAAGTGGTCTTCGTCCGCGGGATGTCCGAAGTGTGGATCCATCATTGTTTTTGACAAATTCAATGCCTTCTTTGCTGGTCCGTGAGTATGCTATACTTCTAAACCTGGGTTCACTACGAGCAATAGCAATGAAAGATTGTGTACTTATATTTGACTATAATCGTAAAGGAGGGCAAGCTTTTCTAGAGTCATTGCTACCTCGGTTGAATCCCAAGAACAATAATGGAGGACCATCAATGCCATTTGAAATCGAGGTCGTCGAAGCAGCATTGCTTTCAAGAATACAACGTTTGGAGCGGAGACTGATGGACTTAGAACCTCGTGTTCAAGCTCTTCTTGAGGCCTTGCCAAATCGGATAACTGGGGAAATATTGGAGCAACTTCGTATTAGCAAACAAACTTTGGTTGAGTTAGGCTCAAGGGCAGGAGCTCTCAGACAGATGCTGCTAGACCTTCTGGAGGACCCAAATGAAATACGGAGGATATGTATTATGGGAAGAAATTGTACACTTAATAAAGGAAACAATAACGTGGAATGCTCAGTTCCCTTAGAAAAGCAGGTTGCTGATGAAGAGGAGGAGGAAATTGAGATGCTTCTGGAAAATTATCTCCAAAGATGTGAATCTTGTCATGGTCAAGCTGAAAGGCTTCTTGATTCTGCAAGGGAAATGGAAGATTCTATAGCTGTCAGCTTAAGCTCAAGAAGGCTTGAAGTTAGCAGGTTTGAACTGCTTCTCCAGGTTGGAACATTCTGTGTGGCAGTTGGTGCCCTTGTAGCAGGTATATTTGGCATGAACCTGAAGTCCTATCTTGAGGAACATGTGTTTGCATTTTGGCTGACTACATCTGGGATTATTATTAGTAGCATTGTTGTTTTTTTTCTTATGTATAACTACCTCAGAGCAAGGAAAATATTTTGA 1341 0.4236 MALTLTSPHFRFQSFLTRTNYVFFSDLTEHQVHDSLTLLRRSKISVNSPPSLKPVKCSRSTEEKKWNDAETVASDSDDVVDDSNGQAPTRISSIEPQRISTTSSGDSLSLGIREPVYEVVEVKSDGTVSTRKINRKQLLKSSGLRPRDVRSVDPSLFLTNSMPSLLVREYAILLNLGSLRAIAMKDCVLIFDYNRKGGQAFLESLLPRLNPKNNNGGPSMPFEIEVVEAALLSRIQRLERRLMDLEPRVQALLEALPNRITGEILEQLRISKQTLVELGSRAGALRQMLLDLLEDPNEIRRICIMGRNCTLNKGNNNVECSVPLEKQVADEEEEEIEMLLENYLQRCESCHGQAERLLDSAREMEDSIAVSLSSRRLEVSRFELLLQVGTFCVAVGALVAGIFGMNLKSYLEEHVFAFWLTTSGIIISSIVVFFLMYNYLRARKIF 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03466 446 CDD Mrs2_Mfm1p-like 119 445 IPR039204 -
Trre12g03466 446 MobiDBLite consensus disorder prediction 57 72 - -
Trre12g03466 446 FunFam Magnesium transporter MRS2-11, chloroplastic 195 377 - -
Trre12g03466 446 Gene3D Magnesium transport protein CorA, transmembrane region 194 377 - -
Trre12g03466 446 Pfam CorA-like Mg2+ transporter protein 329 436 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Trre12g03466 446 Coils Coil 326 346 - -
Trre12g03466 446 MobiDBLite consensus disorder prediction 48 91 - -
Trre12g03466 446 FunFam Magnesium transporter MRS2-11, chloroplastic 112 193 - -
Trre12g03466 446 Gene3D - 112 193 - -
Trre12g03466 446 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 88 445 IPR039204 -
Trre12g03466 446 Coils Coil 235 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03466 Trre-Chr12 50308215 50314369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03466 110 446 MRS2 Gene Family AT5G22830 81.899 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03466 K16075 - gmx:100808371 655.595