Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03465 ATGGCGGAGGACCGTAAAGATGGGAGTGATTACAGTTCAGAGGATGAAGGAACTGAAGATTACAGACGCGGTGGATATCATGCTGTTCAAATTGGTGACACTTTCAAACATGGGTGTTATGTGGTTCAGAGTAAACTTGGTTGGGGTCATTTTTCAACTGTTTGGCTTGCTTGGGATACTCAGAAATTGCGATATGTTGCTTTAAAAATTCAAAAGAGTGCTCAGCACTACACGGAAGCAGCAATGGATGAAATAAAAATTCTTAAACAAATTGCTGAAGGGGATCTAGAGGACAAGAAATGTGTTGTGAAGCTTTTGGACCACTTTAAGCATTCAGGGCCTAATGGCCAGCATGTTTGTATGGTTTTTGAATTCCTTGGTGATAATCTTCTCACACTTATCAAGTATAGTGATTATCGTGGTGTTCCCCTTTCCATGGTCAAAGAAATTTGTTATCATGTTTTGGTCGGTTTGGATTATTTGCATCGTCAGCTTTCTATAATACACACTGATTTGAAGCCGGAGAATGTCTTGCTTGTCTCTCCAATTGATCCATCTAAGGATCCTAGAAAATCAGGAGTCCCACTTGTACTTCCAAACACCAAGGGCAAGACTTTATCCAAGAATGGAACCACAAAAGATGATAAGAGTTCAAATGGAGATCTAACGAAGAACCAGAAAAAGAAAATGCGGAAAAAGGCTAAAAAAATAGCTCAGAAGGAAGGTCCTGAGGTAGCAGAGGAGGATTCTGAAGCACCTGAGCAAGATAATTGTAGTAATGATGTGAAACCAAATGCAGAAAATGGTGAAAGTAAATCTGATAGTCCTACAAGTAAAGATGAATCAGCAAAGACTAATGAAATTAAGGATGTTCCACAAGGAAGTCATGTCTCTAGGAGAGGTAGTCGCTCTACCAGAAAGAAGTTGCTCGAAGCTGTTGATCTTAAGTGCAAACTGGTGGATTTTGGCAATGCTTGTTGGACGTATAAACAATTTACAAATGATATTCAGACTAGGCAGTATAGGTGTCCCGAGGTTCTTCTTGGTTCTAAATACTCAACTCCAGCCGATATGTGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGATAACTATGACAGGGATGAGGATCATCTAGCATTGATGATGGAGCTTCTTGGAATGATGCCTCGCAAGATTGCACTTGGCGGCCGTTATTCCCGGGACTTTTTCAATAGACATGGTGATTTGAGACACATTCGCCGTTTGCGATTCTGGCCTATTACAAAGGTGCTGACAGAGAAGTACGATTTCAGCGAGCAAGATGCAAGTGACATGGCTGACTTCCTTGTTCCATTACTTGACTTTGTTCCTGAAAAGAGGCCAACGGCCGCTCAGTGCCTTAATCATCCATGGATGAGTGTAGGTCCTCGGACTCTTGAGCCCTCATTGACTAACATGCAACCTGATGCTATCAACGGAGAAAAGTCTATAAAGGTGAAGGAAAAAACCGGGCAGGAGGCCGTGGAAGTTAGTATGGGGAATATGGCCATTGATGGAACTCCAAAACCACTCAAAGATTTCCAATCTACAAAATCATCGGAATAG 1620 0.4185 MAEDRKDGSDYSSEDEGTEDYRRGGYHAVQIGDTFKHGCYVVQSKLGWGHFSTVWLAWDTQKLRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDLEDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLSMVKEICYHVLVGLDYLHRQLSIIHTDLKPENVLLVSPIDPSKDPRKSGVPLVLPNTKGKTLSKNGTTKDDKSSNGDLTKNQKKKMRKKAKKIAQKEGPEVAEEDSEAPEQDNCSNDVKPNAENGESKSDSPTSKDESAKTNEIKDVPQGSHVSRRGSRSTRKKLLEAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADMWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPITKVLTEKYDFSEQDASDMADFLVPLLDFVPEKRPTAAQCLNHPWMSVGPRTLEPSLTNMQPDAINGEKSIKVKEKTGQEAVEVSMGNMAIDGTPKPLKDFQSTKSSE 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03465 539 MobiDBLite consensus disorder prediction 182 305 - -
Trre12g03465 539 MobiDBLite consensus disorder prediction 273 287 - -
Trre12g03465 539 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Trre12g03465 539 FunFam Serine/threonine-protein kinase SRPK-like protein 307 477 - -
Trre12g03465 539 Gene3D Transferase(Phosphotransferase) domain 1 123 478 - -
Trre12g03465 539 Pfam Protein kinase domain 40 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03465 539 Pfam Protein kinase domain 314 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03465 539 CDD STKc_SRPK 29 477 - -
Trre12g03465 539 FunFam CMGC/SRPK protein kinase 26 125 - -
Trre12g03465 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Trre12g03465 539 MobiDBLite consensus disorder prediction 257 272 - -
Trre12g03465 539 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Trre12g03465 539 SMART serkin_6 40 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03465 539 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 10 492 - -
Trre12g03465 539 SUPERFAMILY Protein kinase-like (PK-like) 35 481 IPR011009 -
Trre12g03465 539 ProSiteProfiles Protein kinase domain profile. 40 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03465 539 MobiDBLite consensus disorder prediction 208 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03465 Trre-Chr12 50301916 50305699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03465 7 527 EF-hand Containing Proteins AT5G22840 69.962 0.0 742
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Trre12g03465 Pkinase 1.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03465 K08832 - gmx:100791829 920.613