Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03460 ATGATGCAGGTGCCTTGGTTGGGGAAATTGTTGGCCATCACTGCATTTTTTACGACTTGTGAGGTCCATTCAAATGATCGAAAAAATGAGCGTAACATGTTTTGCATTGATTGCATTGACAACCCATTTTGCGGATCTTGTATTAAGTCGAGTCATAAAGATCATAACGTAATCCAAATAAGGAGGTCATCTTATAGTGAAGTAGTTAAGACAACTGAAATTTACAAGCATGTGGACATTCTTGGAATTCAAACATATGTGATCAATAACTCTTCAGTTGTATTCTTAAGCAAGAGGACTCGACCCCATCCTAAGAGGAACAATATTTGCAAAATTGGTCATACTAGCAACTCTCATTGTAAGACATGTGATAGAAATCTTGTGGATTCTTCTTTCTTTTGTTCTTTAGCATGCAAGTTTGCATTTATAAAGAAGGATGGGGGCTTTTTCGTAAACCCAAAAGAAATGGAAGAAATGGAAAGATTGCTAGAAGAATCGGTCAAAGTATCACCGTCAAAAGAAAAAGCCAAAAGTTTCCGTGAACAAAATCTAAAACGAAAAGCAGATGAAGCAGGAATTGATGAAGAAAATGAAGAGGATGAAGAGAAAAAAGAAGAAGAAAACAAAGAAAGTTCCCTTCTTGTTAATCGTCCATCGACTTCATTTCGTAAGCCAAATTCAAGAAGAAAGGGAATACCTCATAGGGCTCCTTTTTTTTAA 720 0.3611 MMQVPWLGKLLAITAFFTTCEVHSNDRKNERNMFCIDCIDNPFCGSCIKSSHKDHNVIQIRRSSYSEVVKTTEIYKHVDILGIQTYVINNSSVVFLSKRTRPHPKRNNICKIGHTSNSHCKTCDRNLVDSSFFCSLACKFAFIKKDGGFFVNPKEMEEMERLLEESVKVSPSKEKAKSFREQNLKRKADEAGIDEENEEDEEKKEEENKESSLLVNRPSTSFRKPNSRRKGIPHRAPFF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03460 239 MobiDBLite consensus disorder prediction 174 239 - -
Trre12g03460 239 Pfam PLATZ transcription factor 61 139 IPR006734 -
Trre12g03460 239 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 238 - -
Trre12g03460 239 Coils Coil 181 217 - -
Trre12g03460 239 Gene3D Classic Zinc Finger 17 79 - -
Trre12g03460 239 MobiDBLite consensus disorder prediction 174 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03460 Trre-Chr12 50269695 50271151 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Trre12g03460 PLATZ 1.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03460 - - cam:101499108 299.286