Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03449 ATGGCTGTTGCTGGAGTGCATGCAGCTGCGGTGGACTCTACATTTTTGAGGGACTCTCATTCTCGGTCACCAAGGAGCCAAGAAGATGGAGGGAGGAGAGGTACCCGGTCATCTTCGCTCTTGCAAATGTGGCGTGAGCTTGAAGATGAGCACGTGGTGAGACAGGTTCAAGGAAGATCTGATGAAGTATTAGTTCAACAGAGGAGTGATGAGTTGGTTGTAGATGCATCGCAGGAAAATATGAATCATATGTCAGAAGATGCAGTTTTAGGTGAGAATGATTCTGAAACATGGTCACAGTCACAGAGTCAGAATGGGTCTCAATATGAACAGGATCAGGTGGATTTGAACAATTCTATCCATGAAAACTTTTCTGGTATTGGAGATGTTGGGAGGGAAAGAGTAAGGAAAGTTTTCAAGGAATGGATGAGTAGTGGTGGTTCTAGGGTTCATGCATCAAATACTACTCGAGGAAATAGTGGTTCGAGGGGTGAATTGCATGGAAAAACTGAGCAGGAAAGAGTGAGTGTCGTAAGGCAATGGGTAGAGATGAGTAGCCAGCTGAGCGGTGTTTCTGTTGGGGAGAATAGGGAAGAACAGTCTGCTGAATTTAGTAACCAAACTGAATGTGTTCATGATGGATTGGCTGTCAATCAGAATGAAGGCCAAAGTGAGCATATATCACGAAGAAGATTCCGTAAATTACATGGTCGGCATTTTATGGTTGCTATTGTTAAGAAGACTGTGATGGAAAGGGAAAGAGAGTATCGGGAATTGTTGGAACGTCGGGCTGTATCTCATTTTCCCCATCGCAATCGCATTCAGGCCCTGCTTAGAGGCAGGTTTTTGAGAAATGATAGACCAATTGATAATAATCGGCCCACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAAAAACAGACTGTATCATGTCTAAGGGAAGGATTTTCTTTTAGAAAGAACAATTTAGGTTATGGTCAAGCTGCAAGCAACCTATCTGATACCTCATCTGACTGTGATATTGATGTCGATACAATTGAACAAACTGGAGCCTCAAGTTCACAAGTAGTTGCTTCTGTACATTCTGAATTATCAAATCCTAATAATAAGGGAAGTGACAGACTTGGGATATCATGTGCTCATGAAGAAGAAACAAGAAATTGGGAGTCGTCTTCCAATATCAGTGTTGAAAGAAGAGATGACACTGCACAAAATGTCGATTCAATGCCAATCGAAGATACCGGTAACGACCTTACCCAACCAAGTTTGCCAATTGAAGTTACGGACCATAGCATTATGCAAGAACAAGAACCAAGTGAGGCACATATTGAGCATTCTCTGATGGGTGATTTAACTGGTGATGAAAGCAATCTATCAAATCACAACAATCGTGTAGGGGGCAATATTGTTGATAATGTAGATTCGGTTTCGGGTATATCTACTGCTCTGGAAAGGGAGCAAGAGGAAGAAACTATTATTGAAAGTGAAGGAAGTGAATGGCATCAAACTAACAGAGAGTGGAGAGATAGCCCCCAGGATAGTGTCGACGATAATCAGCACAGTAGCACATCAAATGAATGGCCCCAGAATAGCTTGGGAAATGATGATGGAGATAATTCTCGTACTCAAGAGCAAGTAGCATCATCTGAAGTGTGGCAAGAAGATGGCAGCTTTCAAGAGGCTGTGGAAATTTGGTTGGGTGGACCTTCTGATAATGGAGCAGCTCCAGTTGGTAGAATTCATGGATTCTATTTTCCAGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAACTGCTTAATAGGAGAAGTGTCTCAAACCTCCTACGAAGCAGTTTTCGTGAAAGTCTCGATCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCACGTTGAGTGGGAGGAGCTGCAAGAAACAACCCCTTCGTCTCCCTCAACAGAACAAGACCAGGATCAGCATAGAAGGGATCAGATTGTTGGTATGGCGGAGGACATTGTCAATAGTTCACGGAACCTGCCTTTACCACCACCAATTCCTCCCCCTTTGCCTTCATGGGATCGACACTCACGTCATGACAATTGGTCAAGGAATGGCATAAATAATCAGCGCCGCGGAAATGAGTGGGATAGTATTAGTGATTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAAAGAATGCTAGAAGCCTGTATGGATATGCAACTTGAGTTGCAACGCTCAATAAGACAAGAAGTCTCTGCAGCCCTTAATCGCTCAACTTGTTCATCAGGAGTACATGACCATGTTTTACCAGACAATAAAACTAATTGGGAATGTGTGAGGAAAGGACTTTGCTGTATATGCTGTGAAGAGAGTATTGATTGTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCAAATCAATTACTAGATAGTAGAAGAAAGTGTCCAATGTGTCGAGCACCAGTGGTGGAAGTTGTTCGTGCATATTCTATATAA 2517 0.4251 MAVAGVHAAAVDSTFLRDSHSRSPRSQEDGGRRGTRSSSLLQMWRELEDEHVVRQVQGRSDEVLVQQRSDELVVDASQENMNHMSEDAVLGENDSETWSQSQSQNGSQYEQDQVDLNNSIHENFSGIGDVGRERVRKVFKEWMSSGGSRVHASNTTRGNSGSRGELHGKTEQERVSVVRQWVEMSSQLSGVSVGENREEQSAEFSNQTECVHDGLAVNQNEGQSEHISRRRFRKLHGRHFMVAIVKKTVMEREREYRELLERRAVSHFPHRNRIQALLRGRFLRNDRPIDNNRPTSIAESELGLLRQKQTVSCLREGFSFRKNNLGYGQAASNLSDTSSDCDIDVDTIEQTGASSSQVVASVHSELSNPNNKGSDRLGISCAHEEETRNWESSSNISVERRDDTAQNVDSMPIEDTGNDLTQPSLPIEVTDHSIMQEQEPSEAHIEHSLMGDLTGDESNLSNHNNRVGGNIVDNVDSVSGISTALEREQEEETIIESEGSEWHQTNREWRDSPQDSVDDNQHSSTSNEWPQNSLGNDDGDNSRTQEQVASSEVWQEDGSFQEAVEIWLGGPSDNGAAPVGRIHGFYFPEDDNVYSVELRELLNRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWEELQETTPSSPSTEQDQDQHRRDQIVGMAEDIVNSSRNLPLPPPIPPPLPSWDRHSRHDNWSRNGINNQRRGNEWDSISDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTCSSGVHDHVLPDNKTNWECVRKGLCCICCEESIDCLLYRCGHMCTCSKCANQLLDSRRKCPMCRAPVVEVVRAYSI 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03449 838 CDD mRING-HC-C3HC5_NEU1 787 836 - -
Trre12g03449 838 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 838 - -
Trre12g03449 838 MobiDBLite consensus disorder prediction 409 424 - -
Trre12g03449 838 MobiDBLite consensus disorder prediction 384 408 - -
Trre12g03449 838 MobiDBLite consensus disorder prediction 485 556 - -
Trre12g03449 838 ProSiteProfiles Zinc finger RING-type profile. 787 826 IPR001841 -
Trre12g03449 838 MobiDBLite consensus disorder prediction 518 556 - -
Trre12g03449 838 Coils Coil 715 742 - -
Trre12g03449 838 MobiDBLite consensus disorder prediction 18 32 - -
Trre12g03449 838 MobiDBLite consensus disorder prediction 144 172 - -
Trre12g03449 838 MobiDBLite consensus disorder prediction 15 39 - -
Trre12g03449 838 SUPERFAMILY RING/U-box 774 832 - -
Trre12g03449 838 MobiDBLite consensus disorder prediction 485 517 - -
Trre12g03449 838 MobiDBLite consensus disorder prediction 384 424 - -
Trre12g03449 838 MobiDBLite consensus disorder prediction 637 658 - -
Trre12g03449 838 Pfam Zinc finger, C3HC4 type (RING finger) 784 831 - -
Trre12g03449 838 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 772 837 IPR013083 -
Trre12g03449 838 MobiDBLite consensus disorder prediction 147 163 - -
Trre12g03449 838 MobiDBLite consensus disorder prediction 89 111 - -
Trre12g03449 838 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03449 Trre-Chr12 50099739 50105599 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03449 787 833 C3H Transcription Factor Family AT3G06140 42.553 6.71e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03449 - - gmx:100804887 1026.93