Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03448 ATGGCTGTTGCTGGAGTGCATGCAGCTGCGGTGGACTCTACATTTTTGAGGGACTCTCATTCTCGGTCACCAAGGAGCCAAGAAGATGGAGGGAGGAGAGGTACCCGGTCATCTTCGCTCTTGCAAATGTGGCGTGAGCTTGAAGATGAGCACGTGGTGAGACAGGTTCAAGGAAGATCTGATGAAGTATTAGTTCAACAGAGGAGTGATGAGTTGGTTGTAGATGCATCGCAGGAAAATATGAATCATATGTCAGAAGATGCAGTTTTAGGTGAGAATGATTCTGAAACATGGTCACAGTCACAGAGTCAGAATGGGTCTCAATATGAACAGGATCAGGTGGATTTGAACAATTCTATCCATGAAAACTTTTCTGGTATTGGAGATGTTGGGAGGGAAAGAGTAAGGAAAGTTTTCAAGGAATGGATGAGTAGTGGTGGTTCTAGGGTTCATGCATCAAATACTACTCGAGGAAATAGTGGTTCGAGGGGTGAATTGCATGGAAAAACTGAGCAGGAAAGAGTGAGTGTCGTAAGGCAATGGGTAGAGATGAGTAGCCAGCTGAGCGGTGTTTCTGTTGGGGAGAATAGGGAAGAACAGTCTGCTGAATTTAGTAACCAAACTGAATGTGTTCATGATGGATTGGCTGTCAATCAGAATGAAGGCCAAAGTGAGCATATATCACGAAGAAGATTCCGTAAATTACATGGTCGGCATTTTATGGTTGCTATTGTTAAGAAGACTGTGATGGAAAGGGAAAGAGAGTATCGGGAATTGTTGGAACGTCGGGCTGTATCTCATTTTCCCCATCGCAATCGCATTCAGGCCCTGCTTAGAGGCAGGTTTTTGAGAAATGATAGACCAATTGATAATAATCGGCCCACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAAAAACAGACTGTATCATGTCTAAGGGAAGGATTTTCTTTTAGAAAGAACAATTTAGGTTATGGTCAAGCTGCAAGCAACCTATCTGATACCTCATCTGACTGTGATATTGATGTCGATACAATTGAACAAACTGGAGCCTCAAGTTCACAAGTAGTTGCTTCTGTACATTCTGAATTATCAAATCCTAATAATAAGGGAAGTGACAGACTTGGGATATCATGTGCTCATGAAGAAGAAACAAGAAATTGGGAGTCGTCTTCCAATATCAGTGTTGAAAGAAGAGATGACACTGCACAAAATGTCGATTCAATGCCAATCGAAGATACCGGTAACGACCTTACCCAACCAAGTTTGCCAATTGAAGTTACGGACCATAGCATTATGCAAGAACAAGAACCAAGTGAGGCACATATTGAGCATTCTCTGATGGGTGATTTAACTGGTGATGAAAGCAATCTATCAAATCACAACAATCGTGTAGGGGGCAATATTGTTGATAATGTAGATTCGGTTTCGGGTATATCTACTGCTCTGGAAAGGGAGCAAGAGGAAGAAACTATTATTGAAAGTGAAGGAAGTGAATGGCATCAAACTAACAGAGAGTGGAGAGATAGCCCCCAGGATAGTGTCGACGATAATCAGCACAGTAGCACATCAAATGAATGGCCCCAGAATAGCTTGGGAAATGATGATGGAGATAATTCTCGTACTCAAGAGCAAGTAGCATCATCTGAAGTGTGGCAAGAAGATGGCAGCTTTCAAGAGGCTGTGGAAATTTGGTTGGGTGGACCTTCTGATAATGGAGCAGCTCCAGTTGGTAGAATTCATGGATTCTATTTTCCAGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAACTGCTTAATAGGAGAAGTGTCTCAAACCTCCTACGAAGCAGTTTTCGTGAAAGTCTCGATCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCACGTTGAGTGGGAGGAGCTGCAAGAAACAACCCCTTCGTCTCCCTCAACAGAACAAGACCAGGATCAGCATAGAAGGGATCAGATTGTTGGTATGGCGGAGGACATTGTCAATAGTTCACGGAACCTGCCTTTACCACCACCAATTCCTCCCCCTTTGCCTTCATGGGATCGACACTCACGTCATGACAATTGGTCAAGGAATGGCATAAATAATCAGCGCCGCGGAAATGTGCATTCATTTGCAGGACACAACCACTTTCCTTTAGCTGATGAGTGGGATAGTATTAGTGATTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAAAGAATGCTAGAAGCCTGTATGGATATGCAACTTGAGTTGCAACGCTCAATAAGACAAGAAGTCTCTGCAGCCCTTAATCGCTCAACTTGTTCATCAGGAGTACATGACCATGTTTTACCAGACAATAAAACTAATTGGGAATGTGTGAGGAAAGGACTTTGCTGTATATGCTGTGAAGAGAGTATTGATTGTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCAAATCAATTACTAGATAGTAGAAGAAAGTGTCCAATGTGTCGAGCACCAGTGGTGGAAGTTGTTCGTGCATATTCTATATAA 2559 0.4252 MAVAGVHAAAVDSTFLRDSHSRSPRSQEDGGRRGTRSSSLLQMWRELEDEHVVRQVQGRSDEVLVQQRSDELVVDASQENMNHMSEDAVLGENDSETWSQSQSQNGSQYEQDQVDLNNSIHENFSGIGDVGRERVRKVFKEWMSSGGSRVHASNTTRGNSGSRGELHGKTEQERVSVVRQWVEMSSQLSGVSVGENREEQSAEFSNQTECVHDGLAVNQNEGQSEHISRRRFRKLHGRHFMVAIVKKTVMEREREYRELLERRAVSHFPHRNRIQALLRGRFLRNDRPIDNNRPTSIAESELGLLRQKQTVSCLREGFSFRKNNLGYGQAASNLSDTSSDCDIDVDTIEQTGASSSQVVASVHSELSNPNNKGSDRLGISCAHEEETRNWESSSNISVERRDDTAQNVDSMPIEDTGNDLTQPSLPIEVTDHSIMQEQEPSEAHIEHSLMGDLTGDESNLSNHNNRVGGNIVDNVDSVSGISTALEREQEEETIIESEGSEWHQTNREWRDSPQDSVDDNQHSSTSNEWPQNSLGNDDGDNSRTQEQVASSEVWQEDGSFQEAVEIWLGGPSDNGAAPVGRIHGFYFPEDDNVYSVELRELLNRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWEELQETTPSSPSTEQDQDQHRRDQIVGMAEDIVNSSRNLPLPPPIPPPLPSWDRHSRHDNWSRNGINNQRRGNVHSFAGHNHFPLADEWDSISDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTCSSGVHDHVLPDNKTNWECVRKGLCCICCEESIDCLLYRCGHMCTCSKCANQLLDSRRKCPMCRAPVVEVVRAYSI 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03448 852 MobiDBLite consensus disorder prediction 409 424 - -
Trre12g03448 852 MobiDBLite consensus disorder prediction 384 408 - -
Trre12g03448 852 MobiDBLite consensus disorder prediction 485 556 - -
Trre12g03448 852 MobiDBLite consensus disorder prediction 518 556 - -
Trre12g03448 852 MobiDBLite consensus disorder prediction 144 172 - -
Trre12g03448 852 MobiDBLite consensus disorder prediction 18 32 - -
Trre12g03448 852 ProSiteProfiles Zinc finger RING-type profile. 801 840 IPR001841 -
Trre12g03448 852 MobiDBLite consensus disorder prediction 15 39 - -
Trre12g03448 852 CDD mRING-HC-C3HC5_NEU1 801 850 - -
Trre12g03448 852 MobiDBLite consensus disorder prediction 485 517 - -
Trre12g03448 852 Pfam Zinc finger, C3HC4 type (RING finger) 798 845 - -
Trre12g03448 852 MobiDBLite consensus disorder prediction 384 424 - -
Trre12g03448 852 MobiDBLite consensus disorder prediction 637 658 - -
Trre12g03448 852 Coils Coil 729 756 - -
Trre12g03448 852 SUPERFAMILY RING/U-box 788 846 - -
Trre12g03448 852 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 852 - -
Trre12g03448 852 MobiDBLite consensus disorder prediction 147 163 - -
Trre12g03448 852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 786 851 IPR013083 -
Trre12g03448 852 MobiDBLite consensus disorder prediction 92 111 - -
Trre12g03448 852 MobiDBLite consensus disorder prediction 89 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03448 Trre-Chr12 50099739 50105599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03448 801 847 C3H Transcription Factor Family AT3G06140 42.553 6.33e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03448 - - gmx:100804887 1017.3