Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre12g03445 | ATGGCGAAAGGAACAGATTCCGATGAGTTTATGGTTCTTTCTAGGGTTAGAACAGGTTTGAAGAGAGAGTTTGCATTTGCAATGAAGGCACAATCTGAGATCGATGGTTCTTTGGGTAGAACAAGGGGTGGTAGTAAGAACCGGAATGAGGCTCCGGTTCAGGAAATTCCGGTTGGGAAAAAACAAAGGAAAACCGGTTTAGAAGATGTTGGGGGTGTAATGAGTGAAGAAGAGGCTAAAAGTGATGTTGTGGATCTTGTTAGTGATGATGAACCTAGGGTTTTGATTGGTGAATTGGAATCTGTTAAAAGTGTTGTTGAAACTGTGATTGATGATGATGAAACCCTTTTGGTTGATGAGAATTTGAAGGAAGAAAATGAAAAAGAGAAAGTTGTGAATGAAATTGAAATGGAAATTTGTGAAACAAAAGAGGAACAAAAAGAGGATAAAAATAATACCCTTTGTGATGATGTTGCTAATGTTAGTGTTAGGAAAAAGAAGAAGGTTTCTCCTTTGGAGAAACCAATGAGAAGGTTTACAAGATCAGCATTGAAACAAAAAGATGAAGAAAATAAGGATAATGTTGTTGGAATGGATGATAATGTTGTTAGAAGGGAAACTGATGTTGTGGCGACACTGACTCCGATGAAATTGTCTAAGTCTGGTTTGATGAAGAGGTTTCCTGTCAAGTTAAAGGATCTTTTGGCTACTGGGATTCTTGAGGGGTTGAAAGTGAAATATATCAAGGGACAGAAGGCGCGTAAACCTGGAGAAAAAGAGTTGCCAGGAGTGATTAAAGATTCTGGGGTTTTGTGCTTTTGTGATAGTTGTAAGGGGACTAAGGTTGTCACGCCGACTGTTTTTGAGTTGCATGCTGGTAGTGCTAATAAACGTCCACCGGAGTATACTTACCTTGAGAATGGAAAACCCCTCCGTGATGTCATGAATGCATGTTGTGGTTTTTCATTGGATAAGTTGGATGAAGCCGTCCAATTGGTCCTTGGTGATTTCACTATGCAGAAATCTAACATCTGTTTCAGTTGCAGAGGGCCAATTTCTGAATCTAGTAATGGTGTGTCAAAACTAGTATGCAATTCATGCATGGAGATGAATGAGGCTCAAACTAGCAGCCAACTTCAAACAGTAGCAACATGCAGTAAAAGTATTCCCCCAGTAGTTCAACCCAGATCACCAGAAACAGTAGTAGTTCCAGAGTCATTAGACACTGGGATGGAAGTTCCAAACTCATTAAACACTGAGATGGCGGTTCCAAACTCGTTGAACAGCGAGATGGCGGTTCCAGAGTCATCTAACACCCAGATGGTTCCAAAGGCATTAAGCACTAGGATGAAGCAGAGCGCATCTCGTGGCAAGAGTCGGGGAAAATTAACTAGAAAGGATCTAGGGTTGCACAAGTTGGTATTTGAAGAGGACGTGTTAGAAAATGGAACTGAATTAGCTTACTATTCTCATGGAAAGAAACTATTGGTCGGTACAAAACAGGGATACGGAATTAGATGTTCCTGTTGCGATACGGAGATTAGTGCTTCTCAGTTTGAAGCTCATGCTGGATGGGCATCTCGACGCAAGCCTTACCTGCACATTTATACATCTAATGGAGTCTCACTACATGAGTTGTCCCTCAATATATCGAAAGACCGGAGATTTTCTGCCAGTGATAATGATGACCTTTGCAGCATATGTCAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCAAGGGCTTTTCACATAGATTGTGTTCCTCTTCCAGGCATTCCCAGTGGCTCTTGGTATTGTAAATATTGCCAGAATAATTTCCAGATGGAGAGTAATGTGCAACGTAATAAGAATGCTCTCGCAGCTGGAAGGATTGAAGGTGTTGATCCTTTAGAACAAATAAACCGAAGATGCATTCGGATTGTCAAAAGTGTAGCTGTTGGCCATGGGGGATGTGCCTTGTGCGGATGTCATGATTTCACTAAAATGTTTGGTCCTCGAATAGTAATGATTTGTGATCAGTGTGAGAGGGAATTTCATGTTGGGTGTTTGAAGGAGCATAACATGCAGAATCTAGAGGAATTGCCTGAAGGGGATTGGTTCTGCAGCCCAAGTTGCAGTCATATTCATTCTTCTCTGGTGAATTTGGTCACTTCTGGGGAGAATAGTCTCCCGGATTCTAGTCTAAGTTTGATAAAAAAGAAGCATGACAAGTGTGCTAAAGAGAAAGGTGCCGACACTGGCACTGAAGAGAAAGGTGCAGACAGTGGTGCTGAAGCGAAGGGTGCAGACACTGGTGCTGAAGAGAAAAGTGCAGACACTGTCGGTGAAGAGAAGGGTGCTGACACTGGCGCCGAAGAGAAGGGCACTGACACTGGCACTGAAGAGAAAGGCGGAGACACTGGCAGTGAAGAGGAAAGTGTAGACACTGGCGTTGAAGAGAAAGGCGCATACACTGGTGTTGAAGAGAAAGGTGCAGACACTGGTGTTGAAGAGAAAGGTGCAGACACTGGCATTGAAGAGAAAGTTGGAGACACTGGTGTTGATCTTGATATTAAATGGAGGGTTCTAAACTGGAAGTTAGTTGCGTCTGGTGAAAATAAGCAATTGTCTAATGAATATAGGCAAGTGCTTTCGAAGGCTGTTTCCATCTTCCATGAGCAATTTTCTCCTATAGTTGATTCTTCTTCTGGCCGTGATTTTATTCCGACAATGCTGTTTGGAAAGAACATCCGTGGACAAGATTTTGCAGGAATGTACTGTGCAGTACTCACTGTCAACCAAGTTGTTGTTTCTGCTGGAGTATTTCGTGTCTTTGGGCCAGAAGTAGCTGAACTACCGTTGGTGGCAACAGATGCTGAGTACCAAGGACAGGGTTACTTTCAATGCCTGTTTTCTTGCATTGAGAGATTACTTCGATCTTTAAGTGTGAAAAACCTTGTCCTACCGGCTGCTGAAGAAGCTAAATATATATGGACTAATAAATTTGGGTTTACAAAGCTCGAGCTCGATGAGATAAACAGTTATAAGAAATTTTATCGAATGATGGTCTTTCAAGGGACCTCAATACTACAGAAGCCTGTTTGTGCACTACCAAGTACTTCTAAGGAGGAAATTGTGTAA | 3126 | 0.4216 | MAKGTDSDEFMVLSRVRTGLKREFAFAMKAQSEIDGSLGRTRGGSKNRNEAPVQEIPVGKKQRKTGLEDVGGVMSEEEAKSDVVDLVSDDEPRVLIGELESVKSVVETVIDDDETLLVDENLKEENEKEKVVNEIEMEICETKEEQKEDKNNTLCDDVANVSVRKKKKVSPLEKPMRRFTRSALKQKDEENKDNVVGMDDNVVRRETDVVATLTPMKLSKSGLMKRFPVKLKDLLATGILEGLKVKYIKGQKARKPGEKELPGVIKDSGVLCFCDSCKGTKVVTPTVFELHAGSANKRPPEYTYLENGKPLRDVMNACCGFSLDKLDEAVQLVLGDFTMQKSNICFSCRGPISESSNGVSKLVCNSCMEMNEAQTSSQLQTVATCSKSIPPVVQPRSPETVVVPESLDTGMEVPNSLNTEMAVPNSLNSEMAVPESSNTQMVPKALSTRMKQSASRGKSRGKLTRKDLGLHKLVFEEDVLENGTELAYYSHGKKLLVGTKQGYGIRCSCCDTEISASQFEAHAGWASRRKPYLHIYTSNGVSLHELSLNISKDRRFSASDNDDLCSICQDGGDLLCCDGCPRAFHIDCVPLPGIPSGSWYCKYCQNNFQMESNVQRNKNALAAGRIEGVDPLEQINRRCIRIVKSVAVGHGGCALCGCHDFTKMFGPRIVMICDQCEREFHVGCLKEHNMQNLEELPEGDWFCSPSCSHIHSSLVNLVTSGENSLPDSSLSLIKKKHDKCAKEKGADTGTEEKGADSGAEAKGADTGAEEKSADTVGEEKGADTGAEEKGTDTGTEEKGGDTGSEEESVDTGVEEKGAYTGVEEKGADTGVEEKGADTGIEEKVGDTGVDLDIKWRVLNWKLVASGENKQLSNEYRQVLSKAVSIFHEQFSPIVDSSSGRDFIPTMLFGKNIRGQDFAGMYCAVLTVNQVVVSAGVFRVFGPEVAELPLVATDAEYQGQGYFQCLFSCIERLLRSLSVKNLVLPAAEEAKYIWTNKFGFTKLELDEINSYKKFYRMMVFQGTSILQKPVCALPSTSKEEIV | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre12g03445 | 1041 | ProSiteProfiles | Zinc finger PHD-type profile. | 562 | 607 | IPR019787 | - | |
| Trre12g03445 | 1041 | Gene3D | - | 857 | 1027 | - | - | |
| Trre12g03445 | 1041 | Pfam | Tify domain binding domain | 263 | 318 | IPR032308 | - | |
| Trre12g03445 | 1041 | Pfam | Tify domain binding domain | 500 | 546 | IPR032308 | - | |
| Trre12g03445 | 1041 | SMART | PHD_3 | 655 | 708 | IPR001965 | - | |
| Trre12g03445 | 1041 | SMART | PHD_3 | 564 | 605 | IPR001965 | - | |
| Trre12g03445 | 1041 | SUPERFAMILY | FYVE/PHD zinc finger | 653 | 705 | IPR011011 | - | |
| Trre12g03445 | 1041 | MobiDBLite | consensus disorder prediction | 743 | 834 | - | - | |
| Trre12g03445 | 1041 | FunFam | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain | 551 | 628 | - | - | |
| Trre12g03445 | 1041 | Pfam | PHD-finger | 565 | 606 | IPR019787 | - | |
| Trre12g03445 | 1041 | PANTHER | AUTOIMMUNE REGULATOR | 117 | 1029 | - | - | |
| Trre12g03445 | 1041 | SUPERFAMILY | FYVE/PHD zinc finger | 552 | 605 | IPR011011 | - | |
| Trre12g03445 | 1041 | MobiDBLite | consensus disorder prediction | 36 | 65 | - | - | |
| Trre12g03445 | 1041 | ProSitePatterns | Zinc finger PHD-type signature. | 565 | 604 | IPR019786 | - | |
| Trre12g03445 | 1041 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 918 | 1003 | IPR016181 | - | |
| Trre12g03445 | 1041 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 648 | 710 | IPR013083 | - | |
| Trre12g03445 | 1041 | CDD | NAT_SF | 922 | 983 | - | - | |
| Trre12g03445 | 1041 | CDD | PHD1_AIRE | 564 | 604 | - | - | |
| Trre12g03445 | 1041 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 557 | 624 | IPR013083 | - | |
| Trre12g03445 | 1041 | FunFam | PHD finger family protein | 852 | 1028 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre12g03445 | Trre-Chr12 | 50061938 | 50068330 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre12g03445 | 220 | 739 | PHD Transcription Factor Family | AT2G36720 | 42.752 | 4.18e-137 | 437 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Trre12g03445 | TDBD | 2.9e-14 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre12g03445 | - | - | tpra:123896735 | 1766.13 |