Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03443 ATGACCACACCTCCAAGCTTTGAAATTGGAAATCAAGGCATGCAAATGTTTCCTATGGTCAGAGAAGATTTGATGCCATTGCCAAACTCCATCGAAGGAATTTCAGGATCACCCTCAAATTCTCTTCTCTTAAATCTCTCAATTCTCAAAGAAAAATTCAATCAAGTGCAAAATCTTGTAGGTGTTATTCTCTCCCCAAATCAACAAGACTCATCAACTAATTCAATAGCTATATCCAACATGAATTCCACAATACAAGAAATCATAGTAACTGCCACATCAATCATGTTCACTTGCCAACATATGGCTCTTGGTTTCCCTCAAGGTAATAATTCTAATCCATGCACAAACCAAGAATTTCAAAAGCAACAATCAAACATTGGCAACAATAATACAAGCATAGATCTTAGAGGTCAAAGTCAAAGCTTATTTTCTAATAGTGAGTCACAAGCATTGGATTGGTTTAGTGAAAGCTATAATAGTAACATTAATATTTATAAGCTCAAGGATGATATTGATGATCAAAGGGTTGATCATGAAATCAGTGAAACCAATAATAGTATAAAAGGTTCTACCGAAGATATTTCAACGAAGAACAATCGTGATCGTGGTAATACTAGTCTAAAATTTGGGCCGTCTTATGCTCGGACTGGCCCAGAATGTGGCGATGATATAGTTGAATTAGACGCAACGGATTTATTAGCTAAGTACACACATTATTGTCAAGTTTGTGGTAAAGGGTTTAAAAGGGATGCAAATTTAAGGATGCATATGAGAGCTCATGGTGATGAATACAAGAGTAGTGCAGCATTGAGCAATCCAATCAATAAGAGTAATAGTGATTATTTGATGAGTATGAAAAATAAGAAATATTCATGTCCTCAAGAAGGGTGTAGGTGGAATCAAAAGCATACCAAGTTTCAACCATTGAAATCATTGATTTGTGCTAAGAATCATTACAAGAGAAGTCATTGTCCTAAAATGTATGTGTGCAAAAGGTGCAATTTGAAGCAATTTTCTGTGCTTTCTGATTTAAGGACACATGAGAAACATTGTGGTGATCTTAGGTGGCAATGCTCATGTGGCACTACCTTTTCTAGGAAAGATAAGCTTATGGGGCATGTTGGTTTGTTTGTGGGACATCACCCAGTTATCAATGGTTTGTCATATAGTACTCACAAATTAGAGCACTAG 1194 0.3593 MTTPPSFEIGNQGMQMFPMVREDLMPLPNSIEGISGSPSNSLLLNLSILKEKFNQVQNLVGVILSPNQQDSSTNSIAISNMNSTIQEIIVTATSIMFTCQHMALGFPQGNNSNPCTNQEFQKQQSNIGNNNTSIDLRGQSQSLFSNSESQALDWFSESYNSNINIYKLKDDIDDQRVDHEISETNNSIKGSTEDISTKNNRDRGNTSLKFGPSYARTGPECGDDIVELDATDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKSSAALSNPINKSNSDYLMSMKNKKYSCPQEGCRWNQKHTKFQPLKSLICAKNHYKRSHCPKMYVCKRCNLKQFSVLSDLRTHEKHCGDLRWQCSCGTTFSRKDKLMGHVGLFVGHHPVINGLSYSTHKLEH 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03443 397 SMART c2h2final6 329 351 IPR013087 -
Trre12g03443 397 SMART c2h2final6 291 324 IPR013087 -
Trre12g03443 397 SMART c2h2final6 239 261 IPR013087 -
Trre12g03443 397 ProSitePatterns Zinc finger C2H2 type domain signature. 241 261 IPR013087 -
Trre12g03443 397 Gene3D Classic Zinc Finger 327 376 - -
Trre12g03443 397 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 38 386 IPR044300 GO:0010044|GO:0010447
Trre12g03443 397 Gene3D Classic Zinc Finger 225 297 - -
Trre12g03443 397 FunFam Zinc finger protein 574 238 263 - -
Trre12g03443 397 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 266 IPR013087 -
Trre12g03443 397 MobiDBLite consensus disorder prediction 182 211 - -
Trre12g03443 397 SUPERFAMILY beta-beta-alpha zinc fingers 237 263 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03443 Trre-Chr12 50054104 50055297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03443 39 384 C2H2 Transcription Factor Family AT5G22890 48.343 5.44e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g03443 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03443 - - psat:127082139 625.935