Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03441 ATGGACATGGAAGGAATTTTAGGCATGAAGGAACATGGTAATGATGCAAGTCACCTCATCAAAGGGAAGCGAACGAAAAGGCGGTTGAGGCAGTTGTCACCTTGTACCGTGGCAACTACCACGCTGACATCAAGCTGTTCGAGTGCCACCGGAGGTGGTGGATCTTTTTCATCCACCACCTTCGATGACACTGAACAAGAGGAGGAAGCAGATATGGCTAATTGTTTGATTCTTCTAGCCCAAGGAAGAACCGGAGGAGAAGGAGGGGGAGAGAATCAATATCAACGTGCTCAGGAGCACCACTACGAGAACAAACAACAACATGTGGACGGTTATAACAAGATAGCAACAACTGAAAAAGTAACAAAAAACGGTTATGAAAGTTATGAGTGCAAAACATGTAACCGTTTTTTTCATTCATTTCAAGCGTTGGGTGGACATAGAGCAAGTCACAAGAAACCAAAGATGAAAGAAGAAAAACAATCTTCGCCTCCGCAGCCGCGACAAATCGCTAACACAACCGGCGAATTTGAAGAAGAAACCAACCAAATTCATACCAAAAATATTACTACCATCAATCCTCTTGTTCCTCCGGTTTCGCTTGAATTAAGGTGTGGTGTTAATATTAATTTCAAGCCCAATAAGCTCAATAAGATTCATGAATGTTCGATTTGCGGCGCGGGATTCACATCAGGTCAAGCATTGGGTGGTCATATGAGGAGACATAGAGCTTCTATTGATAAAAGTAACAACAAAAACAACAACGTTGTAGCTTTTGAAGGTGTTCATGTTAAGTCTAGGAATGTTCTAGAATTGGATCTTAATTTTCCGGCACCGGAGGAAGATCTCTCGGATTCGACGTTTCAGTTTCCGGCGATGGGTTGGGTGGGAAAAGGGAGGAAATACGAAGCTTGCGATTTTGATCAACATTTCAACAAATTCAATCACTCTAATTTAACAAACATGGAAGAGGAAGTTGGAAGAACAAGGCTAGGCAGGGAGACACGCGCACATGCTTCTGCGCGTGAAGCAGTTGTCCCTCGCCCGAAAAAAGCACGGACCCGTAGGCAATCACCGGTGCCGTTTCAAGGAAGTGAGCATGAAGCGGGAGGTTCTTCAGCGGGTGGTTCAATGCCCTCACAACGGTCTGAGAGCGAAGTTGATCATGCTGCTCAAGGTGTAGATGATGGTGCCCAAGGTGTAAACGACGAAAATCCTCCGGTTGACAGAGATGACAATAATGAAGATCCTCCGGTTGACGAGGAAAATGTTGCTGAAGATGTTGCTGAAGAAGAAGATGGTGATGATGATGGACAGGCACCTGTGGTTCCTGAAGAGGGTTATGGAGGGGGTCCGAGCGATTTGTCTCTATTGCATGAGTACCATAAGCATAGAGCAAATCAAATATGGGAAGCGACGAGCAGTGAAGCGCCGATTTTGAAGAAAGTGATGCGCTCTGTAGCAAACGGGAAGAAGTATTTTGAGGACCTGGCGGAGGAAGTTATTTTACTGGACCTGGCGTAG 1524 0.4528 MDMEGILGMKEHGNDASHLIKGKRTKRRLRQLSPCTVATTTLTSSCSSATGGGGSFSSTTFDDTEQEEEADMANCLILLAQGRTGGEGGGENQYQRAQEHHYENKQQHVDGYNKIATTEKVTKNGYESYECKTCNRFFHSFQALGGHRASHKKPKMKEEKQSSPPQPRQIANTTGEFEEETNQIHTKNITTINPLVPPVSLELRCGVNINFKPNKLNKIHECSICGAGFTSGQALGGHMRRHRASIDKSNNKNNNVVAFEGVHVKSRNVLELDLNFPAPEEDLSDSTFQFPAMGWVGKGRKYEACDFDQHFNKFNHSNLTNMEEEVGRTRLGRETRAHASAREAVVPRPKKARTRRQSPVPFQGSEHEAGGSSAGGSMPSQRSESEVDHAAQGVDDGAQGVNDENPPVDRDDNNEDPPVDEENVAEDVAEEEDGDDDGQAPVVPEEGYGGGPSDLSLLHEYHKHRANQIWEATSSEAPILKKVMRSVANGKKYFEDLAEEVILLDLA 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03441 507 MobiDBLite consensus disorder prediction 333 454 - -
Trre12g03441 507 SMART c2h2final6 129 151 IPR013087 -
Trre12g03441 507 SMART c2h2final6 220 242 IPR013087 -
Trre12g03441 507 MobiDBLite consensus disorder prediction 333 350 - -
Trre12g03441 507 MobiDBLite consensus disorder prediction 43 67 - -
Trre12g03441 507 Gene3D Classic Zinc Finger 126 242 - -
Trre12g03441 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 129 156 IPR013087 -
Trre12g03441 507 SUPERFAMILY beta-beta-alpha zinc fingers 128 242 IPR036236 -
Trre12g03441 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 247 IPR013087 -
Trre12g03441 507 Pfam C2H2-type zinc finger 220 244 - -
Trre12g03441 507 Pfam C2H2-type zinc finger 129 154 - -
Trre12g03441 507 ProSitePatterns Zinc finger C2H2 type domain signature. 131 151 IPR013087 -
Trre12g03441 507 MobiDBLite consensus disorder prediction 84 106 - -
Trre12g03441 507 MobiDBLite consensus disorder prediction 414 440 - -
Trre12g03441 507 PANTHER ZINC FINGER PROTEIN ZAT5 62 283 - -
Trre12g03441 507 MobiDBLite consensus disorder prediction 43 61 - -
Trre12g03441 507 ProSitePatterns Zinc finger C2H2 type domain signature. 222 242 IPR013087 -
Trre12g03441 507 MobiDBLite consensus disorder prediction 145 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03441 Trre-Chr12 50019983 50023901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03441 6 289 C2H2 Transcription Factor Family AT2G28200 35.987 6.42e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g03441 zf-C2H2_6 1.2e-11 CL0361