Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03439 ATGAACTCAAATATGGATGTTAACCAAGACTCACTAGTTTCCACTAATAATTTTGAGCTTCACGACTTTATTGATGATCCAAACTTTGATCAATTTATCGATTTAATTCGAGGTGAGAATGAAGATGCAATATGTAACTTTGGTTCTGACCTTATCAATGATTGTTTCATTGATAATAATCATCATGAGCTTCTTTCAATTCCTCCAAACCCATTAATATTTGACCAAAACAGCAACAACTATAGTAATATTGTGAATGTATATGATCCAAGCTCTAGCACAGTTGGCTCCTTCTCTTGTTATGATGTGGAGGTTAAGGGAGAAGGAGAAAATGATGGAGACGATTCTTCGGCAACAACAATCACGACCACTGCGATTGATGATGCCAAACCTAGGGCTAAAACCGATAGGTCTAAGACACTCATTTCCGAGAGGAGAAGGAGAGGTCGGATGAAGGATAAGCTTTATGCATTGCGTTCTTTGGTTCCCAACATTACAAAGATGGATAAGGCCTCTATAATTGGAGATGCAGTATCATATGTGCATGACCTTCAAGCACAATCTAGGAAGTTGAAGGCTGAAGTTTCAGGACTTGAAGCATCCTTATTGGTTTCTGAAAATTATCAAGGATCAATTAACAACACCAATATTAAAGCTCAAAACCATCCCATTTTCAAGAAAATTATTCAGGTGGAGATGTTCCAAGTGGAGGAAAGAGGATATTATACAAAAGTACTGTGCAATAAAGGAGAAGGTGTAGCTGCTTCATTGTACAAGGCTATTGAATCTCTAGAAAATTTCAATGTTCAAAATTCAAATTTGGCTACGGTTTGTGACAATTTTCTACTTACATTTACATTGAATGTAAAAGGTTGTGAACCAGAAATGAACCTTCAAAATTTGAAGCTATGGGTGGCTGGTGCACTTTTGAATCAAGGCTTTGAATTCATGCCATCCTTTTGA 963 0.3676 MNSNMDVNQDSLVSTNNFELHDFIDDPNFDQFIDLIRGENEDAICNFGSDLINDCFIDNNHHELLSIPPNPLIFDQNSNNYSNIVNVYDPSSSTVGSFSCYDVEVKGEGENDGDDSSATTITTTAIDDAKPRAKTDRSKTLISERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQSRKLKAEVSGLEASLLVSENYQGSINNTNIKAQNHPIFKKIIQVEMFQVEERGYYTKVLCNKGEGVAASLYKAIESLENFNVQNSNLATVCDNFLLTFTLNVKGCEPEMNLQNLKLWVAGALLNQGFEFMPSF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03439 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 206 IPR036638 GO:0046983
Trre12g03439 320 SMART finulus 141 190 IPR011598 GO:0046983
Trre12g03439 320 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 131 201 - -
Trre12g03439 320 Gene3D - 127 201 IPR036638 GO:0046983
Trre12g03439 320 Coils Coil 181 201 - -
Trre12g03439 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 16 312 - -
Trre12g03439 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
Trre12g03439 320 Pfam Helix-loop-helix DNA-binding domain 142 185 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03439 Trre-Chr12 49986973 49989121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03439 5 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 49.847 7.73e-96 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre12g03439 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03439 K26214 - gmx:100805451 423.705