Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03416 ATGTCACAATCCATGGCGCTATCTCCATCCTTATCAGAAGGCAAGAAGAAGAAGAAACACACCAACAAACATGGTGAAGAAGAACAACAACAAACGGAGGAACAACAACAACAAAACAAACAAGATTTCATGATCAAACCAGAAAAAATATCACCAACAATCGATACCTCAAATTGGCCTATCCTTTTGAAAAACTACGACCGTCTCAATGTCCGTACCGGTCACTACACACCTCTTCCCGCCGGTCATTCACCTCTGAAGCGTCCACTTGCTGATTATCTCAAATACGGTGTTATCAACCTTGATAAGCCTGCAAATCCTTCTTCTCATGAAGTTGTTGCTTGGATAAAGCGCATTCTTCGTGTCGAGAAAACCGGTCACAGCGGTACATTGGATCCTAAAGTTACTGGTAATTTGATTGTTTGTATTGACAGAGCAACAAGACTTGTTAAATCTCAACAAGGTGCTGGAAAAGAGTATGTTTGTATTGCTCGACTTCATTCGGCTGTTCCTGATGTTTCTAAGGTAGCTCGTGCTCTTGAAACATTAACTGGTGCTGTTTTTCAAAGACCACCTTTGATTTCTGCTGTTAAAAGACAACTTAGGATTAGAACTATTTATGAAAGTAAAATGCTTGAATATGATGCTGAAAGACATTTAGTTGTTTTTTGGATTTCGTGTGAGGCGGGTACTTATGTTAGGACTATGTGTGTTCATTTGGGTTTAATTCTTGGTGTTGGTGGTCATATGCAAGAGCTTAGGAGGGTTAGGTCAGGGATTATGGGTGAGAAAGATAATATGGTTTCTATGCATGATGTTATGGATGCTCAATGGATTAATGATAATAATCGCGATGAGACTTATTTGAGGAGGGTTGTTATGCCTTTGGAGGTACTTTTGACTAGTTATAAGAGATTAGTTGTTAAGGATTCGGCTGTTAATGCTATTTGTTATGGTGCTAAGTTGATGATTCCGGGGTTGCTTAGGTTTGAGAATGATATTGAAGCTGGTGAGGAGGTTGTTCTTATGACTACTAAGGGTGAAGCTATTGCTCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCTACTTGTGATCATGGTGTTGTTGCTAAGATTAAGAGGGTGGTTATGGATCGGGATACTTATCCGAGGAAATGGGGTTTGGGTCCTAGGGCTTCGATGAAGAAGAAGCTGATTGCTTCAGGGAAGTTGGATAAGCATGGGAAGCCGAATGAGAGTACTCCTCAAGAGTGGATGAGGAATGTTGTTTTGCCTACCGGTGGGGATAGTGTTATTGCAGGTATGGCGGCTGCTACCGAAGATGTGAAGAAAGAGGCAGTTGCTGATGGGGAAGGGCGTAAAAGAAAGAAAGATGAATCTAGCGATAGCCCTGCTCCTGCTGCTAATAAGAAGTCCAAAGTTGATGACGAAGAAAAAGTGAAGACCGAGAAAGTAGATGAAGCTGCTGTCGAGGTTGAAGGTGAGAAGACAGACAAGAAGAAGAAGAAAAAGAAGAAGGATAAAGAGAATGGTGACGTGGCATCTTCTGATGAGGAGAAGGTGGACAAGTCCGAGAAGAAGAAAAAGAAGCAAAAGGAAAAGAGCGAAGATGATTCCCCTGAAGTCGACAAATCTGAGAAGAAAAAAAAGAAGAAAGACAAAGAAGCCAAAGATAATGCTGCAGAGATAAGTAATGGGAAGGGTGAAAGCACTGCTGAAAAGAGTGAAAAGAAGCACAAGAAAAAGAAAAACAAAGATGCCCAAGAAGAATAA 1776 0.4116 MSQSMALSPSLSEGKKKKKHTNKHGEEEQQQTEEQQQQNKQDFMIKPEKISPTIDTSNWPILLKNYDRLNVRTGHYTPLPAGHSPLKRPLADYLKYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKMLEYDAERHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIMGEKDNMVSMHDVMDAQWINDNNRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIASGKLDKHGKPNESTPQEWMRNVVLPTGGDSVIAGMAAATEDVKKEAVADGEGRKRKKDESSDSPAPAANKKSKVDDEEKVKTEKVDEAAVEVEGEKTDKKKKKKKKDKENGDVASSDEEKVDKSEKKKKKQKEKSEDDSPEVDKSEKKKKKKDKEAKDNAAEISNGKGESTAEKSEKKHKKKKNKDAQEE 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03416 591 NCBIfam uncharacterized domain 2 299 375 IPR004521 GO:0003723
Trre12g03416 591 FunFam H/ACA ribonucleoprotein complex subunit CBF5 89 295 - -
Trre12g03416 591 Coils Coil 515 535 - -
Trre12g03416 591 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 17 578 IPR004802 GO:0006396
Trre12g03416 591 ProSiteProfiles PUA domain profile. 303 378 - -
Trre12g03416 591 CDD PseudoU_synth_hDyskerin 95 277 - -
Trre12g03416 591 SMART pua_5 304 378 IPR002478 GO:0003723
Trre12g03416 591 Pfam TruB family pseudouridylate synthase (N terminal domain) 117 233 IPR002501 GO:0006396
Trre12g03416 591 MobiDBLite consensus disorder prediction 444 591 - -
Trre12g03416 591 Pfam PUA domain 304 376 IPR002478 GO:0003723
Trre12g03416 591 Gene3D PUA domain 56 387 IPR036974 GO:0003723
Trre12g03416 591 MobiDBLite consensus disorder prediction 444 563 - -
Trre12g03416 591 Pfam tRNA pseudouridylate synthase B C-terminal domain 234 300 IPR032819 -
Trre12g03416 591 MobiDBLite consensus disorder prediction 570 591 - -
Trre12g03416 591 SUPERFAMILY Pseudouridine synthase 56 301 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trre12g03416 591 CDD PUA_Cbf5 302 376 - -
Trre12g03416 591 MobiDBLite consensus disorder prediction 12 33 - -
Trre12g03416 591 Gene3D Pseudouridine synthase 89 295 - -
Trre12g03416 591 SMART DKCLD_2 55 113 IPR012960 -
Trre12g03416 591 MobiDBLite consensus disorder prediction 1 40 - -
Trre12g03416 591 Pfam DKCLD (NUC011) domain 56 113 IPR012960 -
Trre12g03416 591 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 63 388 IPR004802 GO:0006396
Trre12g03416 591 SUPERFAMILY PUA domain-like 303 384 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03416 Trre-Chr12 49706168 49707994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03416 24 474 NAC Transcription Factor Family AT3G57150 83.223 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03416 K11131 - gmx:100806355 777.704