Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03413 ATGGCGGAGAGAATTTGCATATCTAGCGAAGACGTCAAAATTGAAGGTAGCGGCGGTAATATTGGAGCAAAACCCTCTTTGCTAGGTCGAAGAAAACGTTCATTCTTCGACTTAAACGAAGAAGCTGTGGATGATATTGGAAATGATGATGATGATGATGATGATGATGATGATGAGATACTAATAAGTGATGGTATTTGTGGTGAGATAAGCAACAATAACAATGAGATATCATCACAATCACAAGAAGAGAATTTGAGTAGCAATAATAATTCAAGTGAAGAAGGAAAAGGGCGTGGAAGTACAGTAAGACAATATGTGAGGTCCAAAATGCCTAGGCTTCGTTGGACTCCTGATCTTCATTTATCTTTTGTGCATGCTGTTGAGAGGCTTGGAGGGCAAGAAAGAGCAACACCCAAGTTGGTTCTCCAGTTGATGAATGTAAGAGGACTTAGCATTGCACATGTGAAGAGTCATTTGCAGATGTATCGGAGTAAAAAGCTTGATGAATCTGGCCAAGTTTTATCCCAAAAAAATAGGGCAATGCAAGGAAGGAATCATCACATTTTGGATATGTATGGAAGATTTAATGTCCAAGGACAATTTGGTGTTGATAACAACTATTTGCACCCATCGTCTCAACTAATGAAACAACCATATAATGAAATCAAAGCTCATGCTACTTCAAGGTTTCATGAAAGTGGGGTTTTCAATAATAATCACGTGATCTTAAGATCAAGTTCAGTATGGGACAAAGATTTATATAAGACAAGTTCACATATATTTGATGTAAAGGATGCAATAACAAGAAATAATGGACCTATTAATTCTAGCCAAATACATCAATTGGTACCTGAAGAAAAAAAGTGGCCTCAACAAGGAACTGAAAATCACAAGGAATTTATAAGCTTGTCTCGTGATGACCAACATTTTCCATGGACCTCATATTCTAGTCCTGTATTCACTAAGGTACATGATAAAAAAGATGGAATGCAAGAATTCATACACCAAACTCAAGTATTGAAGCAAGGTCGTGTCACAGTCCAATTAAAAAGGTTGAATGAGAAGAAAGAGTACTCACCAAGTTTCTTAGAGCTAAAGCTAAGTCGAGACTCGGAAATCAATGTTAAGGATGAAACAAATATAGATCCAAAAGGCGAACAAGAAGCACACACAATTCTCTCTCTTTCGTTGTTCTCTTCCTCGTCGGCCTCGAATTCAAGGTGA 1227 0.3749 MAERICISSEDVKIEGSGGNIGAKPSLLGRRKRSFFDLNEEAVDDIGNDDDDDDDDDDEILISDGICGEISNNNNEISSQSQEENLSSNNNSSEEGKGRGSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSQKNRAMQGRNHHILDMYGRFNVQGQFGVDNNYLHPSSQLMKQPYNEIKAHATSRFHESGVFNNNHVILRSSSVWDKDLYKTSSHIFDVKDAITRNNGPINSSQIHQLVPEEKKWPQQGTENHKEFISLSRDDQHFPWTSYSSPVFTKVHDKKDGMQEFIHQTQVLKQGRVTVQLKRLNEKKEYSPSFLELKLSRDSEINVKDETNIDPKGEQEAHTILSLSLFSSSSASNSR 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03413 408 NCBIfam myb-like DNA-binding domain, SHAQKYF class 112 167 IPR006447 GO:0003677
Trre12g03413 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 168 IPR017930 -
Trre12g03413 408 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 88 220 IPR046955 GO:0003700
Trre12g03413 408 Gene3D - 111 168 - -
Trre12g03413 408 Pfam Myb-like DNA-binding domain 114 164 IPR001005 -
Trre12g03413 408 SUPERFAMILY Homeodomain-like 110 166 IPR009057 -
Trre12g03413 408 MobiDBLite consensus disorder prediction 68 99 - -
Trre12g03413 408 MobiDBLite consensus disorder prediction 68 103 - -
Trre12g03413 408 FunFam Myb family transcription factor 110 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03413 Trre-Chr12 49681815 49689804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03413 103 192 G2-like Transcription Factor Family AT2G42660 67.778 9.62e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre12g03413 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03413 - - mtr:25487436 442.58